miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5253 3' -60.2 NC_001798.1 + 35581 0.73 0.354128
Target:  5'- cGCGGCGCUGcucgGCUGcgGCCGCgGGCu -3'
miRNA:   3'- cCGUCGUGGCua--CGGCa-CGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 27951 0.73 0.358731
Target:  5'- cGGCcGCGCCccggcgcuccaGCCGUGCCGCgccccGGCg -3'
miRNA:   3'- -CCGuCGUGGcua--------CGGCACGGCGa----CCG- -5'
5253 3' -60.2 NC_001798.1 + 24565 0.73 0.361823
Target:  5'- uGGCGGCgGCCGgcGCgCGgaggcggGCCGCgUGGCc -3'
miRNA:   3'- -CCGUCG-UGGCuaCG-GCa------CGGCG-ACCG- -5'
5253 3' -60.2 NC_001798.1 + 101739 0.72 0.367278
Target:  5'- cGGCGGCccggGCCGuGUccacguucacguggGCCGcGCUGCUGGCg -3'
miRNA:   3'- -CCGUCG----UGGC-UA--------------CGGCaCGGCGACCG- -5'
5253 3' -60.2 NC_001798.1 + 20468 0.72 0.369633
Target:  5'- uGGCgagcagAGCGCCGGUGCgCGUGCgCGauccccggaagaCUGGCc -3'
miRNA:   3'- -CCG------UCGUGGCUACG-GCACG-GC------------GACCG- -5'
5253 3' -60.2 NC_001798.1 + 21635 0.72 0.369633
Target:  5'- cGGguGCGUCGGUGCCccgcucGCCGCcGGCg -3'
miRNA:   3'- -CCguCGUGGCUACGGca----CGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 28993 0.72 0.377558
Target:  5'- gGGCGGCGCCGGccaaccGCgCGccGCCGCgcgGGCc -3'
miRNA:   3'- -CCGUCGUGGCUa-----CG-GCa-CGGCGa--CCG- -5'
5253 3' -60.2 NC_001798.1 + 36397 0.72 0.377558
Target:  5'- cGCGGCGCCGggGCCccccUGCCGggcggGGCg -3'
miRNA:   3'- cCGUCGUGGCuaCGGc---ACGGCga---CCG- -5'
5253 3' -60.2 NC_001798.1 + 26498 0.72 0.385596
Target:  5'- gGGCcGCGCggggaCGGUGCUG-GCCGCggcgGGCg -3'
miRNA:   3'- -CCGuCGUG-----GCUACGGCaCGGCGa---CCG- -5'
5253 3' -60.2 NC_001798.1 + 97207 0.72 0.393747
Target:  5'- uGCAGCaggagaccGCCGcggugGCCGUGgaGCUGGCg -3'
miRNA:   3'- cCGUCG--------UGGCua---CGGCACggCGACCG- -5'
5253 3' -60.2 NC_001798.1 + 27166 0.72 0.393747
Target:  5'- gGGCuGCugCGA-GCuCGggGCCGCgGGCg -3'
miRNA:   3'- -CCGuCGugGCUaCG-GCa-CGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 2494 0.72 0.402008
Target:  5'- gGGuCAGCGCCGcgggGCgCGgcgGCCGCggcGGCg -3'
miRNA:   3'- -CC-GUCGUGGCua--CG-GCa--CGGCGa--CCG- -5'
5253 3' -60.2 NC_001798.1 + 3944 0.72 0.402008
Target:  5'- cGGUAGCGCgCGuagaaggcGCCGgagGCCGCgucGGCg -3'
miRNA:   3'- -CCGUCGUG-GCua------CGGCa--CGGCGa--CCG- -5'
5253 3' -60.2 NC_001798.1 + 2807 0.72 0.402008
Target:  5'- cGGCAGCGCCGG-GCCcaggGCC-CcGGCg -3'
miRNA:   3'- -CCGUCGUGGCUaCGGca--CGGcGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 31833 0.72 0.410379
Target:  5'- cGCGGCAccaacacccCCGGUGCCGccccccacGCCGCggagggGGCg -3'
miRNA:   3'- cCGUCGU---------GGCUACGGCa-------CGGCGa-----CCG- -5'
5253 3' -60.2 NC_001798.1 + 2404 0.72 0.410379
Target:  5'- gGGCGGCgGCCGAgggcGCCGgcgUGUgGCUGGg -3'
miRNA:   3'- -CCGUCG-UGGCUa---CGGC---ACGgCGACCg -5'
5253 3' -60.2 NC_001798.1 + 36045 0.72 0.410379
Target:  5'- uGGCGGCGgUGGucggcgugcUGCCGgagGCUGCgGGCg -3'
miRNA:   3'- -CCGUCGUgGCU---------ACGGCa--CGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 25790 0.71 0.427441
Target:  5'- uGGCcuuCGCCGgcGCCGUggaguuccugggGCUGCUGGCc -3'
miRNA:   3'- -CCGuc-GUGGCuaCGGCA------------CGGCGACCG- -5'
5253 3' -60.2 NC_001798.1 + 116450 0.71 0.427441
Target:  5'- cGGCcGCACCG--GCCG-GCCGaCUGGa -3'
miRNA:   3'- -CCGuCGUGGCuaCGGCaCGGC-GACCg -5'
5253 3' -60.2 NC_001798.1 + 76953 0.71 0.436128
Target:  5'- cGGCGGCGCUGcgGgCGgaccuguggggGCUGCUGGg -3'
miRNA:   3'- -CCGUCGUGGCuaCgGCa----------CGGCGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.