Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5255 | 5' | -59.8 | NC_001798.1 | + | 87504 | 0.66 | 0.775804 |
Target: 5'- -cGG-AUGCUgACCGCGuGcCCCGGCUAc -3' miRNA: 3'- cuCCaUGUGA-UGGCGC-CaGGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 43166 | 0.66 | 0.729026 |
Target: 5'- ----cGCGCcGCCGCGGcaaacgCCUGGCCGg -3' miRNA: 3'- cuccaUGUGaUGGCGCCa-----GGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 4452 | 0.66 | 0.729026 |
Target: 5'- cGGGUACGCcccgcggACCGCGGacgucgUCuCCGGuCCGc -3' miRNA: 3'- cUCCAUGUGa------UGGCGCC------AG-GGCC-GGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 131060 | 0.66 | 0.738574 |
Target: 5'- cGAGGUcaccGCGCccACCGCGGcguaCaCGGCCGc -3' miRNA: 3'- -CUCCA----UGUGa-UGGCGCCag--G-GCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 28048 | 0.66 | 0.748035 |
Target: 5'- --cGUACgACUcgggaACCGCGGUCgagagcgcgCCGGCCGc -3' miRNA: 3'- cucCAUG-UGA-----UGGCGCCAG---------GGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 4079 | 0.66 | 0.748035 |
Target: 5'- -cGGU-CGCcGCgGgGGUCCgGGCCGg -3' miRNA: 3'- cuCCAuGUGaUGgCgCCAGGgCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 29072 | 0.66 | 0.748035 |
Target: 5'- -uGGUAauuagaaACUuuuaAUagGCGGUCCCGGCCGc -3' miRNA: 3'- cuCCAUg------UGA----UGg-CGCCAGGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 33940 | 0.66 | 0.748035 |
Target: 5'- --cGUGC-CUACCuuucccuaGCGGcCCCGGCCc -3' miRNA: 3'- cucCAUGuGAUGG--------CGCCaGGGCCGGu -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 96156 | 0.66 | 0.748035 |
Target: 5'- cGGGUGacucgcCAUggcgGCCGCGccCCCGGCCGc -3' miRNA: 3'- cUCCAU------GUGa---UGGCGCcaGGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 439 | 0.66 | 0.748035 |
Target: 5'- ----cGCGCgccacgggGCUGCGGUCCCgcGGCCGc -3' miRNA: 3'- cuccaUGUGa-------UGGCGCCAGGG--CCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 34816 | 0.66 | 0.766658 |
Target: 5'- cGGGGcccccGCGCUccGCCGgGGgCCCgGGCCGg -3' miRNA: 3'- -CUCCa----UGUGA--UGGCgCCaGGG-CCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 3013 | 0.66 | 0.766658 |
Target: 5'- cGGGG-GCGCggcggGCCG-GGcUCCGGCCAg -3' miRNA: 3'- -CUCCaUGUGa----UGGCgCCaGGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 69203 | 0.66 | 0.761116 |
Target: 5'- -cGGUGgGgUGCCGCaGGgccaaaaggagcgcCCCGGCCGg -3' miRNA: 3'- cuCCAUgUgAUGGCG-CCa-------------GGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 66765 | 0.66 | 0.757399 |
Target: 5'- uGGGGUGCggcgGCguggGCCGCGGaaUCggagUCGGCCGa -3' miRNA: 3'- -CUCCAUG----UGa---UGGCGCC--AG----GGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 27287 | 0.66 | 0.757399 |
Target: 5'- gGGGGgagGgGCUGCCGCGaG-CUCGGCgGg -3' miRNA: 3'- -CUCCa--UgUGAUGGCGC-CaGGGCCGgU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 61852 | 0.66 | 0.748035 |
Target: 5'- cGGGGaACGCggGCCGcCGGcccagCCCGGCg- -3' miRNA: 3'- -CUCCaUGUGa-UGGC-GCCa----GGGCCGgu -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 37889 | 0.67 | 0.719398 |
Target: 5'- aAGGUGUugUaggGCCGCGGaugcCCCGaGCCAg -3' miRNA: 3'- cUCCAUGugA---UGGCGCCa---GGGC-CGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 31693 | 0.67 | 0.719398 |
Target: 5'- -cGGUGgACgcgcACCGCGcGcCCCGGUCGc -3' miRNA: 3'- cuCCAUgUGa---UGGCGC-CaGGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 9740 | 0.67 | 0.719398 |
Target: 5'- gGAGGUGCugUuccaccACCGC-GUUCCGGUa- -3' miRNA: 3'- -CUCCAUGugA------UGGCGcCAGGGCCGgu -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 75435 | 0.67 | 0.709699 |
Target: 5'- cGGGGcccgcacgcaUACGCagGCCGgGGUggccggCCCGGCCGc -3' miRNA: 3'- -CUCC----------AUGUGa-UGGCgCCA------GGGCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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