miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5259 5' -69 NC_001798.1 + 121439 0.73 0.115279
Target:  5'- gGCGCACCCggaccucCUGCCGCgcgUCCCCagcgCGGGCg -3'
miRNA:   3'- -UGCGUGGG-------GGCGGCG---AGGGG----GCCCGa -5'
5259 5' -69 NC_001798.1 + 59212 0.73 0.118366
Target:  5'- uCGcCGCUCCCGcCCGCgaCCCCgGGGCUg -3'
miRNA:   3'- uGC-GUGGGGGC-GGCGa-GGGGgCCCGA- -5'
5259 5' -69 NC_001798.1 + 32786 0.73 0.124178
Target:  5'- gGCGCGCCCgCGCCggccggcgacGC-CCCCgCGGGCc -3'
miRNA:   3'- -UGCGUGGGgGCGG----------CGaGGGG-GCCCGa -5'
5259 5' -69 NC_001798.1 + 153256 0.73 0.127181
Target:  5'- cGCGCGCCgCCGCCGCcgccuccuccUCCuCCgCGGGUc -3'
miRNA:   3'- -UGCGUGGgGGCGGCG----------AGG-GG-GCCCGa -5'
5259 5' -69 NC_001798.1 + 23066 0.72 0.130252
Target:  5'- uCGCACgaUCCCGUCGCccCCCCCGGaGCg -3'
miRNA:   3'- uGCGUG--GGGGCGGCGa-GGGGGCC-CGa -5'
5259 5' -69 NC_001798.1 + 109012 0.72 0.130252
Target:  5'- gACGaaaaCGCCCCCGCggUGCUCCCC-GGGCc -3'
miRNA:   3'- -UGC----GUGGGGGCG--GCGAGGGGgCCCGa -5'
5259 5' -69 NC_001798.1 + 31606 0.72 0.133392
Target:  5'- cGCGCguccggaguccGCCCCgCGCCGCcgccgCCCCCGuGGUg -3'
miRNA:   3'- -UGCG-----------UGGGG-GCGGCGa----GGGGGC-CCGa -5'
5259 5' -69 NC_001798.1 + 114063 0.72 0.133392
Target:  5'- gGC-CGCUCCUGcCCGCgacCCCCCGGGUUa -3'
miRNA:   3'- -UGcGUGGGGGC-GGCGa--GGGGGCCCGA- -5'
5259 5' -69 NC_001798.1 + 145534 0.72 0.135631
Target:  5'- cGCGCGCCCCCGCCcggccgcccgcgucGCgccggcgCCCCCucccGGCg -3'
miRNA:   3'- -UGCGUGGGGGCGG--------------CGa------GGGGGc---CCGa -5'
5259 5' -69 NC_001798.1 + 87727 0.72 0.136601
Target:  5'- aGCGCcgGCCCCCGCCgGCccgaaCCCCGcGGCc -3'
miRNA:   3'- -UGCG--UGGGGGCGG-CGag---GGGGC-CCGa -5'
5259 5' -69 NC_001798.1 + 89391 0.72 0.139549
Target:  5'- cCGUcCCCCgGCCGCUccccuucCCCCCGaGGCa -3'
miRNA:   3'- uGCGuGGGGgCGGCGA-------GGGGGC-CCGa -5'
5259 5' -69 NC_001798.1 + 39838 0.72 0.139881
Target:  5'- -gGC-UCCCCGCCGCgCUgCCGGGCg -3'
miRNA:   3'- ugCGuGGGGGCGGCGaGGgGGCCCGa -5'
5259 5' -69 NC_001798.1 + 23492 0.72 0.139881
Target:  5'- cCGCGCCCCCGCCaGCgCCgcagaccacgCCgCGGGCg -3'
miRNA:   3'- uGCGUGGGGGCGG-CGaGG----------GG-GCCCGa -5'
5259 5' -69 NC_001798.1 + 150697 0.72 0.139881
Target:  5'- cGCGCGCCUgCGCgCGC-CCCCCGccGGCc -3'
miRNA:   3'- -UGCGUGGGgGCG-GCGaGGGGGC--CCGa -5'
5259 5' -69 NC_001798.1 + 122450 0.72 0.139881
Target:  5'- gUGCGCCCCCaCCaGCugUCCCCCGcGGCc -3'
miRNA:   3'- uGCGUGGGGGcGG-CG--AGGGGGC-CCGa -5'
5259 5' -69 NC_001798.1 + 21476 0.72 0.146658
Target:  5'- cCGUcCCCCCgGCCgGC-CCCCCGGGUc -3'
miRNA:   3'- uGCGuGGGGG-CGG-CGaGGGGGCCCGa -5'
5259 5' -69 NC_001798.1 + 58052 0.72 0.146658
Target:  5'- -aGCACCCCCGCCGCaaaCCCCaauGCg -3'
miRNA:   3'- ugCGUGGGGGCGGCGag-GGGGcc-CGa -5'
5259 5' -69 NC_001798.1 + 146982 0.72 0.147004
Target:  5'- cCGCGCCUCCGaggguCCGCcucuugccucggggaCCCCCGGGCg -3'
miRNA:   3'- uGCGUGGGGGC-----GGCGa--------------GGGGGCCCGa -5'
5259 5' -69 NC_001798.1 + 5557 0.71 0.153733
Target:  5'- cGCGCucccguugGCCCCCGCCGg-CCCCaaagGGGCc -3'
miRNA:   3'- -UGCG--------UGGGGGCGGCgaGGGGg---CCCGa -5'
5259 5' -69 NC_001798.1 + 75186 0.71 0.153733
Target:  5'- gACGCugggggCCCGCCGC-CCCCCGGaGCc -3'
miRNA:   3'- -UGCGugg---GGGCGGCGaGGGGGCC-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.