Results 1 - 20 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5263 | 3' | -56.6 | NC_001798.1 | + | 53028 | 1.12 | 0.001653 |
Target: 5'- aAGCAACCCUAUAUCCCGGGACGCGGCa -3' miRNA: 3'- -UCGUUGGGAUAUAGGGCCCUGCGCCG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 113504 | 0.84 | 0.115372 |
Target: 5'- cGCGGCCCUGUGcgCCCuGGugGCGGCc -3' miRNA: 3'- uCGUUGGGAUAUa-GGGcCCugCGCCG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 11642 | 0.8 | 0.206483 |
Target: 5'- gGGCGuCCCUGUGUCCCcgGGGGCGgGGg -3' miRNA: 3'- -UCGUuGGGAUAUAGGG--CCCUGCgCCg -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 139549 | 0.78 | 0.302103 |
Target: 5'- uGCcGCgCCUGcagugGUUCCGGGACGUGGCg -3' miRNA: 3'- uCGuUG-GGAUa----UAGGGCCCUGCGCCG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 132132 | 0.76 | 0.369413 |
Target: 5'- aGGCGGCCCUGcgccgCCgGGGGC-CGGCg -3' miRNA: 3'- -UCGUUGGGAUaua--GGgCCCUGcGCCG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 22390 | 0.76 | 0.369413 |
Target: 5'- gGGCGgaACCCcgGcGagCCGGGGCGCGGCg -3' miRNA: 3'- -UCGU--UGGGa-UaUagGGCCCUGCGCCG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 74814 | 0.76 | 0.353603 |
Target: 5'- cGCAgacACCCg----CCgGGGACGCGGCc -3' miRNA: 3'- uCGU---UGGGauauaGGgCCCUGCGCCG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 154056 | 0.75 | 0.419665 |
Target: 5'- cGCGGCacggCUGgagCgCCGGGGCGCGGCa -3' miRNA: 3'- uCGUUGg---GAUauaG-GGCCCUGCGCCG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 2627 | 0.75 | 0.39402 |
Target: 5'- cGGCGgcGCCCUGg---CCGGGGCGgGGCu -3' miRNA: 3'- -UCGU--UGGGAUauagGGCCCUGCgCCG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 121729 | 0.75 | 0.402455 |
Target: 5'- cGGCGGCCCaccUGUCCCuGGGGauggggaaaGCGGCa -3' miRNA: 3'- -UCGUUGGGau-AUAGGG-CCCUg--------CGCCG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 24711 | 0.75 | 0.428435 |
Target: 5'- cGC-GCCCgggg-CCCGcGGGCGCGGCc -3' miRNA: 3'- uCGuUGGGauauaGGGC-CCUGCGCCG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 15270 | 0.75 | 0.411004 |
Target: 5'- gGGCGguGCCCcggGUUCCGGG-CGUGGCg -3' miRNA: 3'- -UCGU--UGGGauaUAGGGCCCuGCGCCG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 106276 | 0.74 | 0.464562 |
Target: 5'- uAGaCGACCUUGUccCCCGGaGGCGCGaGCg -3' miRNA: 3'- -UC-GUUGGGAUAuaGGGCC-CUGCGC-CG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 150561 | 0.74 | 0.464562 |
Target: 5'- gAGCGGCCCgggg-CCCGcGGG-GCGGCg -3' miRNA: 3'- -UCGUUGGGauauaGGGC-CCUgCGCCG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 58276 | 0.74 | 0.455379 |
Target: 5'- cAGCAGCggguCCgugagGUCCCGGGGCGCGa- -3' miRNA: 3'- -UCGUUG----GGaua--UAGGGCCCUGCGCcg -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 123929 | 0.74 | 0.483211 |
Target: 5'- uGCuguGCCCUGgGUCCgGGGGCcugGUGGCa -3' miRNA: 3'- uCGu--UGGGAUaUAGGgCCCUG---CGCCG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 124199 | 0.74 | 0.49267 |
Target: 5'- cAGCGcACCCUGgccGUCCgggGGGACGCGaGCc -3' miRNA: 3'- -UCGU-UGGGAUa--UAGGg--CCCUGCGC-CG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 59455 | 0.74 | 0.47384 |
Target: 5'- cGCAcCCCgcgugCCCGGG-CGCGGUg -3' miRNA: 3'- uCGUuGGGauauaGGGCCCuGCGCCG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 23815 | 0.74 | 0.47384 |
Target: 5'- gGGcCGGCCCcccgccCCCGGGGCGCGuGCu -3' miRNA: 3'- -UC-GUUGGGauaua-GGGCCCUGCGC-CG- -5' |
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5263 | 3' | -56.6 | NC_001798.1 | + | 4825 | 0.74 | 0.446295 |
Target: 5'- uGCcACCCgaa--CCCGGGccGCGCGGCg -3' miRNA: 3'- uCGuUGGGauauaGGGCCC--UGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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