miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5267 3' -54.4 NC_001798.1 + 152364 0.67 0.907861
Target:  5'- ------cCGGGUCUCCuccucccgccgGGCCGCCGc- -3'
miRNA:   3'- uuuuuuaGCCCGGAGG-----------CCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 146642 0.67 0.901476
Target:  5'- ------gCGGGCaUCCGGCgGCCGg- -3'
miRNA:   3'- uuuuuuaGCCCGgAGGCCGgUGGUac -5'
5267 3' -54.4 NC_001798.1 + 61466 0.67 0.901476
Target:  5'- -------gGGGCCUCCGgGCC-CCGg- -3'
miRNA:   3'- uuuuuuagCCCGGAGGC-CGGuGGUac -5'
5267 3' -54.4 NC_001798.1 + 2823 0.67 0.894846
Target:  5'- -------aGGGCC-CCGGCgACCAg- -3'
miRNA:   3'- uuuuuuagCCCGGaGGCCGgUGGUac -5'
5267 3' -54.4 NC_001798.1 + 86232 0.67 0.894846
Target:  5'- ------cUGGGCCcgCUgauGGCCACCGUGc -3'
miRNA:   3'- uuuuuuaGCCCGGa-GG---CCGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 120208 0.67 0.894846
Target:  5'- aGAGGAGcUCGGGCC-CCGGgccguuggcccCCGCCGa- -3'
miRNA:   3'- -UUUUUU-AGCCCGGaGGCC-----------GGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 148076 0.67 0.894846
Target:  5'- gAAGGAAaCGGGCCgggggCCggGGCCGCUAg- -3'
miRNA:   3'- -UUUUUUaGCCCGGa----GG--CCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 9417 0.67 0.887976
Target:  5'- gGGAGAGUCGGGUCUCUccggagGGUCcuGCCAc- -3'
miRNA:   3'- -UUUUUUAGCCCGGAGG------CCGG--UGGUac -5'
5267 3' -54.4 NC_001798.1 + 37319 0.67 0.887276
Target:  5'- ----cGUCGGGCCUCCcuacuuacgcagaGGCgACCu-- -3'
miRNA:   3'- uuuuuUAGCCCGGAGG-------------CCGgUGGuac -5'
5267 3' -54.4 NC_001798.1 + 25997 0.68 0.873529
Target:  5'- ------gCuGGCCUCCGGCCG-CGUGu -3'
miRNA:   3'- uuuuuuaGcCCGGAGGCCGGUgGUAC- -5'
5267 3' -54.4 NC_001798.1 + 54365 0.68 0.873529
Target:  5'- -----cUCGcGGCgUCCGGCCcACCGg- -3'
miRNA:   3'- uuuuuuAGC-CCGgAGGCCGG-UGGUac -5'
5267 3' -54.4 NC_001798.1 + 72701 0.68 0.865962
Target:  5'- cGGGAAAUccaCGGGUUcCUGGCCAUCGUGu -3'
miRNA:   3'- -UUUUUUA---GCCCGGaGGCCGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 130241 0.68 0.858175
Target:  5'- ------cCGGGUCUCCGGgcggcCCGCCAc- -3'
miRNA:   3'- uuuuuuaGCCCGGAGGCC-----GGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 92938 0.68 0.858175
Target:  5'- ----cGUCGGGCCc---GCCGCCGUGg -3'
miRNA:   3'- uuuuuUAGCCCGGaggcCGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 86082 0.68 0.858175
Target:  5'- uGGGAGUCgGGGCC-CCGGCUgcgcGCCGc- -3'
miRNA:   3'- uUUUUUAG-CCCGGaGGCCGG----UGGUac -5'
5267 3' -54.4 NC_001798.1 + 96719 0.68 0.850174
Target:  5'- -uGGGGUCGGGCCUCauCGuGCC-CCcgGa -3'
miRNA:   3'- uuUUUUAGCCCGGAG--GC-CGGuGGuaC- -5'
5267 3' -54.4 NC_001798.1 + 86321 0.68 0.850174
Target:  5'- ------gCGGGCCUaCUGGCUGgCCAUGc -3'
miRNA:   3'- uuuuuuaGCCCGGA-GGCCGGU-GGUAC- -5'
5267 3' -54.4 NC_001798.1 + 1468 0.68 0.850174
Target:  5'- cAGAAGUCcGGCgCgCCGGgCGCCAUGg -3'
miRNA:   3'- uUUUUUAGcCCG-GaGGCCgGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 59923 0.68 0.850174
Target:  5'- cGAGGAAccCGGG-CUCCGGCCgaGCCAg- -3'
miRNA:   3'- -UUUUUUa-GCCCgGAGGCCGG--UGGUac -5'
5267 3' -54.4 NC_001798.1 + 2180 0.68 0.841964
Target:  5'- --cGGGUCGGGCaccuggcgcaUCCaGGCCGCCGc- -3'
miRNA:   3'- uuuUUUAGCCCGg---------AGG-CCGGUGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.