Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5276 | 3' | -56 | NC_001798.1 | + | 149988 | 0.72 | 0.634224 |
Target: 5'- gGCGcccGCGGACGCCGGGGCGagcggCC-CGUg -3' miRNA: 3'- -CGC---UGCUUGCGGCCUUGCa----GGaGCGu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 51190 | 0.72 | 0.64429 |
Target: 5'- gGCGGCGccccccCGCCGG-GCGUCCUuucCGCGc -3' miRNA: 3'- -CGCUGCuu----GCGGCCuUGCAGGA---GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 77494 | 0.72 | 0.654347 |
Target: 5'- cGCGACGAccGCuGCuCGGGAaagCCUCGCGg -3' miRNA: 3'- -CGCUGCU--UG-CG-GCCUUgcaGGAGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 104518 | 0.72 | 0.654347 |
Target: 5'- cGCGGCGGcgGCG-CGGuuGACGUCgUCGCGg -3' miRNA: 3'- -CGCUGCU--UGCgGCC--UUGCAGgAGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 66924 | 0.72 | 0.661377 |
Target: 5'- uGCGACGAACgacaacgucgggcuGCaCGGAGuCGUCCgacCGCGa -3' miRNA: 3'- -CGCUGCUUG--------------CG-GCCUU-GCAGGa--GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 130419 | 0.72 | 0.664386 |
Target: 5'- gGCGACGAGCGCCaGGGCGacgcggacUCC-CGUc -3' miRNA: 3'- -CGCUGCUUGCGGcCUUGC--------AGGaGCGu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 77862 | 0.71 | 0.684382 |
Target: 5'- cGCGGCcAACGCCGaGGCGgucacCCUCGCc -3' miRNA: 3'- -CGCUGcUUGCGGCcUUGCa----GGAGCGu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 102499 | 0.71 | 0.685378 |
Target: 5'- gGgGACGGgccgGCGCCGGggUGUCCguaggccaccgucccCGCGg -3' miRNA: 3'- -CgCUGCU----UGCGGCCuuGCAGGa--------------GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 134999 | 0.71 | 0.70421 |
Target: 5'- cGCGGUGGGCGCCaGGGuCGUCCUgccccCGCGg -3' miRNA: 3'- -CGCUGCUUGCGG-CCUuGCAGGA-----GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 112780 | 0.71 | 0.71404 |
Target: 5'- -gGGCGGACGCaCGGAuguGCGg-CUCGCGa -3' miRNA: 3'- cgCUGCUUGCG-GCCU---UGCagGAGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 19787 | 0.7 | 0.733489 |
Target: 5'- gGCGGCGGggaaGCGCauuuuuCGGcaccCGUCCUCGCGu -3' miRNA: 3'- -CGCUGCU----UGCG------GCCuu--GCAGGAGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 58617 | 0.7 | 0.733489 |
Target: 5'- aGCGGCGGugGCgGGGACaggCCUUGgAa -3' miRNA: 3'- -CGCUGCUugCGgCCUUGca-GGAGCgU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 131351 | 0.7 | 0.733489 |
Target: 5'- cGCGACGucgGCGcCCGGcGCGgCCUCGgGg -3' miRNA: 3'- -CGCUGCu--UGC-GGCCuUGCaGGAGCgU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 139371 | 0.7 | 0.733489 |
Target: 5'- gGCGGgGAGgGCucgCGGGACGUCCggGCAc -3' miRNA: 3'- -CGCUgCUUgCG---GCCUUGCAGGagCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 69296 | 0.7 | 0.74309 |
Target: 5'- aGCGGgGGGCGCCgGGGACGgucagcccUCC-CGCGc -3' miRNA: 3'- -CGCUgCUUGCGG-CCUUGC--------AGGaGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 1512 | 0.7 | 0.74309 |
Target: 5'- gGCGGCGGcccggccguccaGCGCCGGGagcacggcgcgGCGguaCUCGCGc -3' miRNA: 3'- -CGCUGCU------------UGCGGCCU-----------UGCag-GAGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 72564 | 0.7 | 0.74309 |
Target: 5'- aCGACGccaagcgcGCGCUGGucGCGUCcCUCGCGg -3' miRNA: 3'- cGCUGCu-------UGCGGCCu-UGCAG-GAGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 153007 | 0.7 | 0.752598 |
Target: 5'- cGgGGCGGuCGCCGGGGCGgagUCCgggcccgCGCGg -3' miRNA: 3'- -CgCUGCUuGCGGCCUUGC---AGGa------GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 135527 | 0.7 | 0.752598 |
Target: 5'- -gGACGccCGCCGGGcccucgagGCGUCCgugCGCGc -3' miRNA: 3'- cgCUGCuuGCGGCCU--------UGCAGGa--GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 102223 | 0.7 | 0.762002 |
Target: 5'- uCGAcCGGGCGCggcuCGGGGCGggCCUCGCc -3' miRNA: 3'- cGCU-GCUUGCG----GCCUUGCa-GGAGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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