miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 5' -52.7 NC_001798.1 + 154400 0.76 0.568175
Target:  5'- -gCGCGAAGGCGGGCGGcggcGGCgGGCg -3'
miRNA:   3'- uaGUGCUUCUGCCCGUUa---UUGgCCGg -5'
5276 5' -52.7 NC_001798.1 + 153682 0.66 0.975002
Target:  5'- --gGCGggGACgcggGGGCcgccGCCGGCg -3'
miRNA:   3'- uagUGCuuCUG----CCCGuuauUGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 153153 0.7 0.867801
Target:  5'- cUCGCGcAGACcuucggagcuccgGGGCucc-GCCGGCCg -3'
miRNA:   3'- uAGUGCuUCUG-------------CCCGuuauUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 153038 0.68 0.937664
Target:  5'- -gCGCGgcGGCGcGCGGUuGGCCGGCg -3'
miRNA:   3'- uaGUGCuuCUGCcCGUUA-UUGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 152899 0.66 0.969341
Target:  5'- -cCGCGA--GCGGGaac--GCCGGCCc -3'
miRNA:   3'- uaGUGCUucUGCCCguuauUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 151577 0.69 0.921768
Target:  5'- -gCGCGucGGCGGGCGuggGGCugcccuggcgcuCGGCCg -3'
miRNA:   3'- uaGUGCuuCUGCCCGUua-UUG------------GCCGG- -5'
5276 5' -52.7 NC_001798.1 + 151170 0.67 0.959223
Target:  5'- -cCACGggGGggUGGGCGAcagGGCgCGGaCCg -3'
miRNA:   3'- uaGUGCuuCU--GCCCGUUa--UUG-GCC-GG- -5'
5276 5' -52.7 NC_001798.1 + 150371 0.73 0.753808
Target:  5'- -gCACGGcGGGCGGcGCGGgc-CCGGCCg -3'
miRNA:   3'- uaGUGCU-UCUGCC-CGUUauuGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 148305 0.66 0.982007
Target:  5'- --gGCGggGugGGGUGA-GugCGGUUg -3'
miRNA:   3'- uagUGCuuCugCCCGUUaUugGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 147234 0.7 0.883291
Target:  5'- -gCGCGggGGCcccgGGGCcccgGGCCGcGCCg -3'
miRNA:   3'- uaGUGCuuCUG----CCCGuua-UUGGC-CGG- -5'
5276 5' -52.7 NC_001798.1 + 146561 0.69 0.921768
Target:  5'- -cCGCGGgccagcAGACGGGCc---GCgGGCCa -3'
miRNA:   3'- uaGUGCU------UCUGCCCGuuauUGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 146485 0.7 0.86086
Target:  5'- cUC-CGggGcCGGGCcg-GGCCGGCa -3'
miRNA:   3'- uAGuGCuuCuGCCCGuuaUUGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 146296 0.66 0.97986
Target:  5'- --aGCGggGAgUGGGCG---GCCGGgCg -3'
miRNA:   3'- uagUGCuuCU-GCCCGUuauUGGCCgG- -5'
5276 5' -52.7 NC_001798.1 + 144577 0.74 0.672485
Target:  5'- --gGCGAGGACGGGCGGcUGGgUGGCg -3'
miRNA:   3'- uagUGCUUCUGCCCGUU-AUUgGCCGg -5'
5276 5' -52.7 NC_001798.1 + 142947 0.71 0.844815
Target:  5'- -aCACGggGAcggcCGGGCAG-AGCCGcCCa -3'
miRNA:   3'- uaGUGCuuCU----GCCCGUUaUUGGCcGG- -5'
5276 5' -52.7 NC_001798.1 + 141568 0.68 0.947016
Target:  5'- uUCGCGGAGgagcugcggcgGCGGcacGCGAcGGCCGGCg -3'
miRNA:   3'- uAGUGCUUC-----------UGCC---CGUUaUUGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 138553 0.67 0.962821
Target:  5'- ---uCGAAGACcaGGCGGUcGCCGGUCc -3'
miRNA:   3'- uaguGCUUCUGc-CCGUUAuUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 138335 0.73 0.753808
Target:  5'- -gCACG-AGACGcgaGGCGGccgAGCCGGCCu -3'
miRNA:   3'- uaGUGCuUCUGC---CCGUUa--UUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 136983 0.67 0.955392
Target:  5'- --aACGAGGGgGGGCAcg-GCCaGGCUg -3'
miRNA:   3'- uagUGCUUCUgCCCGUuauUGG-CCGG- -5'
5276 5' -52.7 NC_001798.1 + 135998 0.66 0.969341
Target:  5'- uGUCcCGggGGCGGGgAGUcggUCGGCg -3'
miRNA:   3'- -UAGuGCuuCUGCCCgUUAuu-GGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.