miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5280 3' -61 NC_001798.1 + 46520 0.66 0.734932
Target:  5'- --cGGCUCggugaGGGUCGgggGGGUGGCCcGGa -3'
miRNA:   3'- ucuCCGAG-----CCCGGCa--CUCGCUGGuCC- -5'
5280 3' -61 NC_001798.1 + 26897 0.66 0.734932
Target:  5'- cGGGGgUCGGGCgGgcggGGGuCGGgCGGGn -3'
miRNA:   3'- uCUCCgAGCCCGgCa---CUC-GCUgGUCC- -5'
5280 3' -61 NC_001798.1 + 24853 0.66 0.725483
Target:  5'- cGAGGCcgccgUGGccgccgugcgcGCCGUGAGCcuggucGCCGGGg -3'
miRNA:   3'- uCUCCGa----GCC-----------CGGCACUCGc-----UGGUCC- -5'
5280 3' -61 NC_001798.1 + 76848 0.66 0.725483
Target:  5'- uGGGGCuaaaggcgugUCcGGCCGUGcuGGCGACCcugcGGGc -3'
miRNA:   3'- uCUCCG----------AGcCCGGCAC--UCGCUGG----UCC- -5'
5280 3' -61 NC_001798.1 + 1509 0.66 0.725483
Target:  5'- cGAGGCggCGgcccGGCCGUccAGCG-CCGGGa -3'
miRNA:   3'- uCUCCGa-GC----CCGGCAc-UCGCuGGUCC- -5'
5280 3' -61 NC_001798.1 + 116204 0.66 0.719778
Target:  5'- gGGcAGGCUCaGGCCGagcugaaucaccugaUGcGCGACCcGGc -3'
miRNA:   3'- -UC-UCCGAGcCCGGC---------------ACuCGCUGGuCC- -5'
5280 3' -61 NC_001798.1 + 102483 0.66 0.719778
Target:  5'- aGGAGGCggguagugcggggaCGGGCCG---GCG-CCGGGg -3'
miRNA:   3'- -UCUCCGa-------------GCCCGGCacuCGCuGGUCC- -5'
5280 3' -61 NC_001798.1 + 148084 0.66 0.71596
Target:  5'- -cGGGCcggGGGCCG-GGGCcGCUAGGg -3'
miRNA:   3'- ucUCCGag-CCCGGCaCUCGcUGGUCC- -5'
5280 3' -61 NC_001798.1 + 129334 0.66 0.71596
Target:  5'- uGGAGGac--GGCCGcgGAGCGcccGCCGGGc -3'
miRNA:   3'- -UCUCCgagcCCGGCa-CUCGC---UGGUCC- -5'
5280 3' -61 NC_001798.1 + 103463 0.66 0.715004
Target:  5'- cGGAGGCa-GGGCCGcacgcaccgugucUGGGU--CCAGGg -3'
miRNA:   3'- -UCUCCGagCCCGGC-------------ACUCGcuGGUCC- -5'
5280 3' -61 NC_001798.1 + 91807 0.66 0.706371
Target:  5'- cGGGGCgUgGGGaCCGUGGGCGggGCCcGa -3'
miRNA:   3'- uCUCCG-AgCCC-GGCACUCGC--UGGuCc -5'
5280 3' -61 NC_001798.1 + 43476 0.66 0.706371
Target:  5'- cGGGGg-CGGG-CGUGAGgGccGCCGGGg -3'
miRNA:   3'- uCUCCgaGCCCgGCACUCgC--UGGUCC- -5'
5280 3' -61 NC_001798.1 + 102202 0.66 0.706371
Target:  5'- --uGGCgcgCGGcgcGCCGgGAGuCGACCGGGc -3'
miRNA:   3'- ucuCCGa--GCC---CGGCaCUC-GCUGGUCC- -5'
5280 3' -61 NC_001798.1 + 133482 0.66 0.706371
Target:  5'- gAGcGGCUgccccccgcgCGGGuCCGUGAGCGAgaCGGa -3'
miRNA:   3'- -UCuCCGA----------GCCC-GGCACUCGCUg-GUCc -5'
5280 3' -61 NC_001798.1 + 15349 0.66 0.700589
Target:  5'- gGGGGGCgaggCGgugaggggggaaucGGCCGUGGGCGcggcggaggcgcccACCGGa -3'
miRNA:   3'- -UCUCCGa---GC--------------CCGGCACUCGC--------------UGGUCc -5'
5280 3' -61 NC_001798.1 + 153072 0.66 0.696724
Target:  5'- uGGGGCgggCGGaGCgGcgGGGCGgcGCCGGGc -3'
miRNA:   3'- uCUCCGa--GCC-CGgCa-CUCGC--UGGUCC- -5'
5280 3' -61 NC_001798.1 + 41369 0.66 0.696724
Target:  5'- cGGcGGCUCauGGcGCCG-GGGaUGGCCGGGa -3'
miRNA:   3'- -UCuCCGAG--CC-CGGCaCUC-GCUGGUCC- -5'
5280 3' -61 NC_001798.1 + 27016 0.66 0.696724
Target:  5'- cGGGGgUCGGGCgGgcggGGGuCGGgCGGGc -3'
miRNA:   3'- uCUCCgAGCCCGgCa---CUC-GCUgGUCC- -5'
5280 3' -61 NC_001798.1 + 61326 0.66 0.696724
Target:  5'- cAGGGGCggCGGGCU-UGGGUGuCCcGGa -3'
miRNA:   3'- -UCUCCGa-GCCCGGcACUCGCuGGuCC- -5'
5280 3' -61 NC_001798.1 + 53438 0.66 0.687027
Target:  5'- cGAGGU--GGaGCUGUcGGGCGGCCAGc -3'
miRNA:   3'- uCUCCGagCC-CGGCA-CUCGCUGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.