miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5280 3' -61 NC_001798.1 + 134986 0.71 0.3978
Target:  5'- uGGGGGC-CuGGCCcgcgGUGGGCG-CCAGGg -3'
miRNA:   3'- -UCUCCGaGcCCGG----CACUCGCuGGUCC- -5'
5280 3' -61 NC_001798.1 + 34835 0.71 0.414343
Target:  5'- cGGGGGCcCGGGCCG-GAcCG-CCGGGc -3'
miRNA:   3'- -UCUCCGaGCCCGGCaCUcGCuGGUCC- -5'
5280 3' -61 NC_001798.1 + 12904 0.71 0.422771
Target:  5'- cGGGGGCUUgGGGCCGUGccacccGGCGAUuuuuaagcuguaUAGGg -3'
miRNA:   3'- -UCUCCGAG-CCCGGCAC------UCGCUG------------GUCC- -5'
5280 3' -61 NC_001798.1 + 135226 0.71 0.429588
Target:  5'- gGGAGGC-CGGGCUGccggaagcccggGGGCGGgCGGGc -3'
miRNA:   3'- -UCUCCGaGCCCGGCa-----------CUCGCUgGUCC- -5'
5280 3' -61 NC_001798.1 + 36069 0.71 0.430444
Target:  5'- cGGAGGCUgCGGGCgCGggguaggUGGGUGGgCGGGu -3'
miRNA:   3'- -UCUCCGA-GCCCG-GC-------ACUCGCUgGUCC- -5'
5280 3' -61 NC_001798.1 + 43368 0.71 0.430444
Target:  5'- cGGGGGUUguuggugcgaacgCGGGCCagccGUGGGgGACUAGGa -3'
miRNA:   3'- -UCUCCGA-------------GCCCGG----CACUCgCUGGUCC- -5'
5280 3' -61 NC_001798.1 + 148276 0.71 0.431302
Target:  5'- gAGGGGCgggcguggCGGGCagGUGuGCGGgCGGGg -3'
miRNA:   3'- -UCUCCGa-------GCCCGg-CACuCGCUgGUCC- -5'
5280 3' -61 NC_001798.1 + 148383 0.71 0.431302
Target:  5'- gAGGGGCgggcguggCGGGCagGUGuGCGGgCGGGg -3'
miRNA:   3'- -UCUCCGa-------GCCCGg-CACuCGCUgGUCC- -5'
5280 3' -61 NC_001798.1 + 3013 0.7 0.448661
Target:  5'- cGGGGGCgcggCGGGCCGggcucCGGCCAGc -3'
miRNA:   3'- -UCUCCGa---GCCCGGCacuc-GCUGGUCc -5'
5280 3' -61 NC_001798.1 + 35286 0.7 0.448661
Target:  5'- cGGGGCUCGGGCUcuccGGCGGCUuaauGGa -3'
miRNA:   3'- uCUCCGAGCCCGGcac-UCGCUGGu---CC- -5'
5280 3' -61 NC_001798.1 + 27181 0.7 0.448661
Target:  5'- cGGGGCcgCGGGCgCGggggGAGgGGCgGGGg -3'
miRNA:   3'- uCUCCGa-GCCCG-GCa---CUCgCUGgUCC- -5'
5280 3' -61 NC_001798.1 + 9650 0.7 0.466399
Target:  5'- cGAGGCgcagCGGGCCGcgcgcgGAG-GGCgCGGGa -3'
miRNA:   3'- uCUCCGa---GCCCGGCa-----CUCgCUG-GUCC- -5'
5280 3' -61 NC_001798.1 + 3997 0.7 0.466399
Target:  5'- cGGGGC-CGcccGGCCGUGAaGCGGCCcguGGc -3'
miRNA:   3'- uCUCCGaGC---CCGGCACU-CGCUGGu--CC- -5'
5280 3' -61 NC_001798.1 + 120502 0.7 0.475403
Target:  5'- cGGAGGCgcgCGuguuGGCCGUGAaCG-CCGGGu -3'
miRNA:   3'- -UCUCCGa--GC----CCGGCACUcGCuGGUCC- -5'
5280 3' -61 NC_001798.1 + 78566 0.7 0.484493
Target:  5'- gGGAGGCgCuGGCCGcgcgcGAGCG-CCGGGc -3'
miRNA:   3'- -UCUCCGaGcCCGGCa----CUCGCuGGUCC- -5'
5280 3' -61 NC_001798.1 + 39868 0.7 0.484493
Target:  5'- cGAGGCUuCGGggguGCCGgcguccucgGGGCGgGCCGGGg -3'
miRNA:   3'- uCUCCGA-GCC----CGGCa--------CUCGC-UGGUCC- -5'
5280 3' -61 NC_001798.1 + 135309 0.7 0.493665
Target:  5'- -uGGGCcCGGGCCGUgcugGAGCG-CCuGGu -3'
miRNA:   3'- ucUCCGaGCCCGGCA----CUCGCuGGuCC- -5'
5280 3' -61 NC_001798.1 + 36315 0.7 0.493665
Target:  5'- cGGGGCgCGGGCCGg----GGCCGGGg -3'
miRNA:   3'- uCUCCGaGCCCGGCacucgCUGGUCC- -5'
5280 3' -61 NC_001798.1 + 36487 0.7 0.493665
Target:  5'- aGGGGGCgcCGGcGCgaCGcGGGCGGCCGGGc -3'
miRNA:   3'- -UCUCCGa-GCC-CG--GCaCUCGCUGGUCC- -5'
5280 3' -61 NC_001798.1 + 120217 0.7 0.502916
Target:  5'- -cGGGCccCGGGCCGUuGGCccccgccgaGGCCAGGa -3'
miRNA:   3'- ucUCCGa-GCCCGGCAcUCG---------CUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.