miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5290 3' -53.4 NC_001798.1 + 141557 0.66 0.970611
Target:  5'- gGGUGuucgcGUUCGCggaggagcugcGGCGgcGGCACGcGACg -3'
miRNA:   3'- -CCACu----CAAGCGau---------CCGU--UCGUGC-CUG- -5'
5290 3' -53.4 NC_001798.1 + 36599 0.66 0.968189
Target:  5'- gGGcGGGggCGCgcGGCGgccgGGCGgGGGCg -3'
miRNA:   3'- -CCaCUCaaGCGauCCGU----UCGUgCCUG- -5'
5290 3' -53.4 NC_001798.1 + 36557 0.66 0.968189
Target:  5'- gGGcGGGggCGCgcGGCGgccgGGCGgGGGCg -3'
miRNA:   3'- -CCaCUCaaGCGauCCGU----UCGUgCCUG- -5'
5290 3' -53.4 NC_001798.1 + 36515 0.66 0.968189
Target:  5'- gGGcGGGggCGCgcGGCGgccgGGCGgGGGCg -3'
miRNA:   3'- -CCaCUCaaGCGauCCGU----UCGUgCCUG- -5'
5290 3' -53.4 NC_001798.1 + 31340 0.66 0.964967
Target:  5'- cGGcgGGGggCGCgc-GCAGGCGCGG-Cg -3'
miRNA:   3'- -CCa-CUCaaGCGaucCGUUCGUGCCuG- -5'
5290 3' -53.4 NC_001798.1 + 67605 0.66 0.964967
Target:  5'- cGGacgGAGaccgCGCUccGGCGAGgGCGGAUg -3'
miRNA:   3'- -CCa--CUCaa--GCGAu-CCGUUCgUGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 15088 0.66 0.961523
Target:  5'- gGGguucgGAGUUCGgaAGGCGAGgC-CGGugGCg -3'
miRNA:   3'- -CCa----CUCAAGCgaUCCGUUC-GuGCC--UG- -5'
5290 3' -53.4 NC_001798.1 + 154040 0.66 0.961523
Target:  5'- uGG-GAGcgCGCcgGGGCGcGGCACGG-Cu -3'
miRNA:   3'- -CCaCUCaaGCGa-UCCGU-UCGUGCCuG- -5'
5290 3' -53.4 NC_001798.1 + 47231 0.66 0.961523
Target:  5'- gGGUGGGcgugUCGUUGGGCGgcccccGGCcuuugcuuccucGCGGAa -3'
miRNA:   3'- -CCACUCa---AGCGAUCCGU------UCG------------UGCCUg -5'
5290 3' -53.4 NC_001798.1 + 45271 0.66 0.957851
Target:  5'- cGGUGGGggcCGC--GGaCAAGUcgGCGGACg -3'
miRNA:   3'- -CCACUCaa-GCGauCC-GUUCG--UGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 44624 0.67 0.953946
Target:  5'- cGGUGGGcgCGCccgugGGGCcauuGGGCGCaucGGACc -3'
miRNA:   3'- -CCACUCaaGCGa----UCCG----UUCGUG---CCUG- -5'
5290 3' -53.4 NC_001798.1 + 38402 0.67 0.953946
Target:  5'- cGUGAGUUC-CUGGacgcgcuaugaaGCGGGC-CGGGCc -3'
miRNA:   3'- cCACUCAAGcGAUC------------CGUUCGuGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 30512 0.67 0.953137
Target:  5'- gGGUGAGgaggaaGCggaagcgggagggggGGGCGAcgugugugccguguGCACGGACg -3'
miRNA:   3'- -CCACUCaag---CGa--------------UCCGUU--------------CGUGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 105800 0.67 0.940794
Target:  5'- aGGUGAGgaUGCUuGGCcagAAGCGgGGGa -3'
miRNA:   3'- -CCACUCaaGCGAuCCG---UUCGUgCCUg -5'
5290 3' -53.4 NC_001798.1 + 86639 0.67 0.935921
Target:  5'- --cGAGUUCGagGGGCGGGUcuguauagcccuGCGGGCc -3'
miRNA:   3'- ccaCUCAAGCgaUCCGUUCG------------UGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 32954 0.67 0.930801
Target:  5'- gGGUGGGagUGggGGGgGGGgACGGACa -3'
miRNA:   3'- -CCACUCaaGCgaUCCgUUCgUGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 85824 0.67 0.930801
Target:  5'- cGGggGGGggCGg-GGGCGGGCGgGGGCu -3'
miRNA:   3'- -CCa-CUCaaGCgaUCCGUUCGUgCCUG- -5'
5290 3' -53.4 NC_001798.1 + 69477 0.68 0.925431
Target:  5'- --cGGGccgUCGCggcgagcgaUGGGCGGGCGCaGGACg -3'
miRNA:   3'- ccaCUCa--AGCG---------AUCCGUUCGUG-CCUG- -5'
5290 3' -53.4 NC_001798.1 + 4205 0.68 0.913947
Target:  5'- cGUG-GUcugcggCGCUGGcGgGGGCGCGGGCg -3'
miRNA:   3'- cCACuCAa-----GCGAUC-CgUUCGUGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 147593 0.68 0.913947
Target:  5'- aGGUGAGcUUCuGCUgAGGCG-GCGgGGAg -3'
miRNA:   3'- -CCACUC-AAG-CGA-UCCGUuCGUgCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.