miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5290 3' -53.4 NC_001798.1 + 154391 0.69 0.887339
Target:  5'- uGGggGGGggCGCgaAGGCGGGCggcggcgGCGGGCg -3'
miRNA:   3'- -CCa-CUCaaGCGa-UCCGUUCG-------UGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 154040 0.66 0.961523
Target:  5'- uGG-GAGcgCGCcgGGGCGcGGCACGG-Cu -3'
miRNA:   3'- -CCaCUCaaGCGa-UCCGU-UCGUGCCuG- -5'
5290 3' -53.4 NC_001798.1 + 150854 0.68 0.907834
Target:  5'- cGGUcGGG-UCGC--GGCGGGCugGGAg -3'
miRNA:   3'- -CCA-CUCaAGCGauCCGUUCGugCCUg -5'
5290 3' -53.4 NC_001798.1 + 150086 0.69 0.888036
Target:  5'- --gGGGggCGagGGGCGAGCGCGGGg -3'
miRNA:   3'- ccaCUCaaGCgaUCCGUUCGUGCCUg -5'
5290 3' -53.4 NC_001798.1 + 149247 0.7 0.833887
Target:  5'- cGG-GGGcgUCGCc-GGCcGGCGCGGGCg -3'
miRNA:   3'- -CCaCUCa-AGCGauCCGuUCGUGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 148416 0.75 0.596839
Target:  5'- gGGUGGGcgCcgggGCggGGGUggGCACGGGCg -3'
miRNA:   3'- -CCACUCaaG----CGa-UCCGuuCGUGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 148376 0.72 0.741164
Target:  5'- gGGUGAGgaggggcgggCGUggcGGGCAGGUguGCGGGCg -3'
miRNA:   3'- -CCACUCaa--------GCGa--UCCGUUCG--UGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 147593 0.68 0.913947
Target:  5'- aGGUGAGcUUCuGCUgAGGCG-GCGgGGAg -3'
miRNA:   3'- -CCACUC-AAG-CGA-UCCGUuCGUgCCUg -5'
5290 3' -53.4 NC_001798.1 + 144557 0.71 0.779979
Target:  5'- cGUGGGggggCGUUcgaaaGGGCGAGgACGGGCg -3'
miRNA:   3'- cCACUCaa--GCGA-----UCCGUUCgUGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 141557 0.66 0.970611
Target:  5'- gGGUGuucgcGUUCGCggaggagcugcGGCGgcGGCACGcGACg -3'
miRNA:   3'- -CCACu----CAAGCGau---------CCGU--UCGUGC-CUG- -5'
5290 3' -53.4 NC_001798.1 + 132477 0.77 0.456959
Target:  5'- uGGUGuccguGUaccagUCGCUgGGGCGGGUACGGACu -3'
miRNA:   3'- -CCACu----CA-----AGCGA-UCCGUUCGUGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 129277 0.73 0.700764
Target:  5'- uGGUGAcGUUC-CUcGGCAGGCaccgcGCGGGCg -3'
miRNA:   3'- -CCACU-CAAGcGAuCCGUUCG-----UGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 105800 0.67 0.940794
Target:  5'- aGGUGAGgaUGCUuGGCcagAAGCGgGGGa -3'
miRNA:   3'- -CCACUCaaGCGAuCCG---UUCGUgCCUg -5'
5290 3' -53.4 NC_001798.1 + 93538 0.7 0.858381
Target:  5'- --gGAGUUCGCc-GGCGAGCACcuGGCc -3'
miRNA:   3'- ccaCUCAAGCGauCCGUUCGUGc-CUG- -5'
5290 3' -53.4 NC_001798.1 + 86639 0.67 0.935921
Target:  5'- --cGAGUUCGagGGGCGGGUcuguauagcccuGCGGGCc -3'
miRNA:   3'- ccaCUCAAGCgaUCCGUUCG------------UGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 85824 0.67 0.930801
Target:  5'- cGGggGGGggCGg-GGGCGGGCGgGGGCu -3'
miRNA:   3'- -CCa-CUCaaGCgaUCCGUUCGUgCCUG- -5'
5290 3' -53.4 NC_001798.1 + 79929 0.68 0.901476
Target:  5'- -uUGGGUgUCGCUGGGCccAGCugGG-Cu -3'
miRNA:   3'- ccACUCA-AGCGAUCCGu-UCGugCCuG- -5'
5290 3' -53.4 NC_001798.1 + 79261 0.69 0.866129
Target:  5'- uGGcgGAGUUCGaCgcGGCGGcCGCGGACc -3'
miRNA:   3'- -CCa-CUCAAGC-GauCCGUUcGUGCCUG- -5'
5290 3' -53.4 NC_001798.1 + 69477 0.68 0.925431
Target:  5'- --cGGGccgUCGCggcgagcgaUGGGCGGGCGCaGGACg -3'
miRNA:   3'- ccaCUCa--AGCG---------AUCCGUUCGUG-CCUG- -5'
5290 3' -53.4 NC_001798.1 + 67605 0.66 0.964967
Target:  5'- cGGacgGAGaccgCGCUccGGCGAGgGCGGAUg -3'
miRNA:   3'- -CCa--CUCaa--GCGAu-CCGUUCgUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.