miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5302 5' -51.8 NC_001798.1 + 18887 1.12 0.006041
Target:  5'- gCCCAAAUUCACCCGACCGAUCGUGCGa -3'
miRNA:   3'- -GGGUUUAAGUGGGCUGGCUAGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 131490 0.77 0.624359
Target:  5'- cCCCGGGUcCACCCGAaaacaaCGAUCGaGCGg -3'
miRNA:   3'- -GGGUUUAaGUGGGCUg-----GCUAGCaCGC- -5'
5302 5' -51.8 NC_001798.1 + 69465 0.73 0.802798
Target:  5'- cCCCAAAagCACCgGGCCG-UCGcgGCGa -3'
miRNA:   3'- -GGGUUUaaGUGGgCUGGCuAGCa-CGC- -5'
5302 5' -51.8 NC_001798.1 + 5025 0.72 0.876387
Target:  5'- gCCGAcaUCGCcuCCGACCGGggUGUGCGg -3'
miRNA:   3'- gGGUUuaAGUG--GGCUGGCUa-GCACGC- -5'
5302 5' -51.8 NC_001798.1 + 72659 0.72 0.881415
Target:  5'- gCCCAGGUcUCGCacgaggguaacgugCUGGCCG-UCGUGCGg -3'
miRNA:   3'- -GGGUUUA-AGUG--------------GGCUGGCuAGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 103008 0.71 0.890457
Target:  5'- gCCCAGGUgCGCCCGGCCaGcgCGaGCu -3'
miRNA:   3'- -GGGUUUAaGUGGGCUGG-CuaGCaCGc -5'
5302 5' -51.8 NC_001798.1 + 73017 0.71 0.909816
Target:  5'- cCCCA-----GCCCGGCCGcagaccucGUCGUGCu -3'
miRNA:   3'- -GGGUuuaagUGGGCUGGC--------UAGCACGc -5'
5302 5' -51.8 NC_001798.1 + 110888 0.7 0.921524
Target:  5'- gUCCAGGU--ACCCGGCgGuucgCGUGCGg -3'
miRNA:   3'- -GGGUUUAagUGGGCUGgCua--GCACGC- -5'
5302 5' -51.8 NC_001798.1 + 25529 0.7 0.927013
Target:  5'- gCCAGGU--GCCCGACCcgGAggaCGUGCGc -3'
miRNA:   3'- gGGUUUAagUGGGCUGG--CUa--GCACGC- -5'
5302 5' -51.8 NC_001798.1 + 19999 0.69 0.946538
Target:  5'- uUCCGGGUUCuCCCGGCCGGcCGgggaggGCc -3'
miRNA:   3'- -GGGUUUAAGuGGGCUGGCUaGCa-----CGc -5'
5302 5' -51.8 NC_001798.1 + 70754 0.69 0.954863
Target:  5'- cCCCGGcgUaCAgccugcucuuCCCGuccCCGAUCGUGCa -3'
miRNA:   3'- -GGGUUuaA-GU----------GGGCu--GGCUAGCACGc -5'
5302 5' -51.8 NC_001798.1 + 95114 0.69 0.958677
Target:  5'- gCCCGuGAUggccgcgCGCCCGAU-GGUCGUGCu -3'
miRNA:   3'- -GGGU-UUAa------GUGGGCUGgCUAGCACGc -5'
5302 5' -51.8 NC_001798.1 + 97333 0.69 0.962263
Target:  5'- gCCAGGcgacgUCGCCCGACgaucaGAUCGagGCGc -3'
miRNA:   3'- gGGUUUa----AGUGGGCUGg----CUAGCa-CGC- -5'
5302 5' -51.8 NC_001798.1 + 22859 0.68 0.965627
Target:  5'- aCCCGGAccgUCGCCCcGCCGcgCG-GCc -3'
miRNA:   3'- -GGGUUUa--AGUGGGcUGGCuaGCaCGc -5'
5302 5' -51.8 NC_001798.1 + 147163 0.68 0.965627
Target:  5'- uCCCGGGUagcCGCCCGgcGCCGggCGgaagGCGu -3'
miRNA:   3'- -GGGUUUAa--GUGGGC--UGGCuaGCa---CGC- -5'
5302 5' -51.8 NC_001798.1 + 39182 0.68 0.965627
Target:  5'- uCCCAGGaa-ACCCGACgGGUCucgGCGu -3'
miRNA:   3'- -GGGUUUaagUGGGCUGgCUAGca-CGC- -5'
5302 5' -51.8 NC_001798.1 + 154257 0.68 0.965627
Target:  5'- -gCGAAcUCACCCGucCCGGcuggCGUGCGc -3'
miRNA:   3'- ggGUUUaAGUGGGCu-GGCUa---GCACGC- -5'
5302 5' -51.8 NC_001798.1 + 100242 0.68 0.968775
Target:  5'- gCCCG---UCGCCCcgGACaacguGAUCGUGCa -3'
miRNA:   3'- -GGGUuuaAGUGGG--CUGg----CUAGCACGc -5'
5302 5' -51.8 NC_001798.1 + 16769 0.68 0.968775
Target:  5'- gUCCGGGgaCACCCGACCcgccgCGUGUc -3'
miRNA:   3'- -GGGUUUaaGUGGGCUGGcua--GCACGc -5'
5302 5' -51.8 NC_001798.1 + 87012 0.68 0.968775
Target:  5'- gCCCAGA--CGCCCu-CCGAggagaucgccaUCGUGCGc -3'
miRNA:   3'- -GGGUUUaaGUGGGcuGGCU-----------AGCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.