miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5302 5' -51.8 NC_001798.1 + 2127 0.66 0.993226
Target:  5'- gCCAGGUccUCGCCCGGCag--CG-GCGa -3'
miRNA:   3'- gGGUUUA--AGUGGGCUGgcuaGCaCGC- -5'
5302 5' -51.8 NC_001798.1 + 3995 0.66 0.991898
Target:  5'- gCCGGGgcCGCCCGGCCGugaagcggcccguggCGUcGCGg -3'
miRNA:   3'- gGGUUUaaGUGGGCUGGCua-------------GCA-CGC- -5'
5302 5' -51.8 NC_001798.1 + 5025 0.72 0.876387
Target:  5'- gCCGAcaUCGCcuCCGACCGGggUGUGCGg -3'
miRNA:   3'- gGGUUuaAGUG--GGCUGGCUa-GCACGC- -5'
5302 5' -51.8 NC_001798.1 + 11581 0.66 0.994125
Target:  5'- gUCUcGAUUCG-CUGGCCGAUCGcGUGg -3'
miRNA:   3'- -GGGuUUAAGUgGGCUGGCUAGCaCGC- -5'
5302 5' -51.8 NC_001798.1 + 14037 0.67 0.9853
Target:  5'- aCCCAu----GCCCGGCaCGGggCGUGUGg -3'
miRNA:   3'- -GGGUuuaagUGGGCUG-GCUa-GCACGC- -5'
5302 5' -51.8 NC_001798.1 + 14106 0.66 0.991101
Target:  5'- cCCCGGg--CACCCGACacacaAUCGggGCGa -3'
miRNA:   3'- -GGGUUuaaGUGGGCUGgc---UAGCa-CGC- -5'
5302 5' -51.8 NC_001798.1 + 15971 0.66 0.988482
Target:  5'- cCCCGAcgUCuuCCG-UgGGUCGUGCc -3'
miRNA:   3'- -GGGUUuaAGugGGCuGgCUAGCACGc -5'
5302 5' -51.8 NC_001798.1 + 16769 0.68 0.968775
Target:  5'- gUCCGGGgaCACCCGACCcgccgCGUGUc -3'
miRNA:   3'- -GGGUUUaaGUGGGCUGGcua--GCACGc -5'
5302 5' -51.8 NC_001798.1 + 18887 1.12 0.006041
Target:  5'- gCCCAAAUUCACCCGACCGAUCGUGCGa -3'
miRNA:   3'- -GGGUUUAAGUGGGCUGGCUAGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 19999 0.69 0.946538
Target:  5'- uUCCGGGUUCuCCCGGCCGGcCGgggaggGCc -3'
miRNA:   3'- -GGGUUUAAGuGGGCUGGCUaGCa-----CGc -5'
5302 5' -51.8 NC_001798.1 + 20246 0.67 0.983477
Target:  5'- uCCCAGGUUcCGCCCGA--GAUC-UGCa -3'
miRNA:   3'- -GGGUUUAA-GUGGGCUggCUAGcACGc -5'
5302 5' -51.8 NC_001798.1 + 22539 0.66 0.993226
Target:  5'- gCCAGGaUCuACCCGAUCGGcgCGgagagGCGa -3'
miRNA:   3'- gGGUUUaAG-UGGGCUGGCUa-GCa----CGC- -5'
5302 5' -51.8 NC_001798.1 + 22859 0.68 0.965627
Target:  5'- aCCCGGAccgUCGCCCcGCCGcgCG-GCc -3'
miRNA:   3'- -GGGUUUa--AGUGGGcUGGCuaGCaCGc -5'
5302 5' -51.8 NC_001798.1 + 25529 0.7 0.927013
Target:  5'- gCCAGGU--GCCCGACCcgGAggaCGUGCGc -3'
miRNA:   3'- gGGUUUAagUGGGCUGG--CUa--GCACGC- -5'
5302 5' -51.8 NC_001798.1 + 29884 0.67 0.986806
Target:  5'- cCCCGGAc-CACCCGGCUgcggguuggggguGGUCGcggGCGg -3'
miRNA:   3'- -GGGUUUaaGUGGGCUGG-------------CUAGCa--CGC- -5'
5302 5' -51.8 NC_001798.1 + 31131 0.66 0.989857
Target:  5'- cCCCGAAgagCGcCCCGGCgCGGgggCG-GCGg -3'
miRNA:   3'- -GGGUUUaa-GU-GGGCUG-GCUa--GCaCGC- -5'
5302 5' -51.8 NC_001798.1 + 39182 0.68 0.965627
Target:  5'- uCCCAGGaa-ACCCGACgGGUCucgGCGu -3'
miRNA:   3'- -GGGUUUaagUGGGCUGgCUAGca-CGC- -5'
5302 5' -51.8 NC_001798.1 + 48366 0.66 0.991101
Target:  5'- gCCCGGGgcCGCCCcGCgGggCGUGCc -3'
miRNA:   3'- -GGGUUUaaGUGGGcUGgCuaGCACGc -5'
5302 5' -51.8 NC_001798.1 + 56382 0.66 0.991101
Target:  5'- gCCCGGA-UCACCUG-CCGcUCG-GUGg -3'
miRNA:   3'- -GGGUUUaAGUGGGCuGGCuAGCaCGC- -5'
5302 5' -51.8 NC_001798.1 + 62488 0.68 0.976979
Target:  5'- cCUCGGAgauacUCAcCCCGcCCGAgcUCGUGCa -3'
miRNA:   3'- -GGGUUUa----AGU-GGGCuGGCU--AGCACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.