miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5302 5' -51.8 NC_001798.1 + 69465 0.73 0.802798
Target:  5'- cCCCAAAagCACCgGGCCG-UCGcgGCGa -3'
miRNA:   3'- -GGGUUUaaGUGGgCUGGCuAGCa-CGC- -5'
5302 5' -51.8 NC_001798.1 + 70754 0.69 0.954863
Target:  5'- cCCCGGcgUaCAgccugcucuuCCCGuccCCGAUCGUGCa -3'
miRNA:   3'- -GGGUUuaA-GU----------GGGCu--GGCUAGCACGc -5'
5302 5' -51.8 NC_001798.1 + 71869 0.66 0.992221
Target:  5'- cCCCucGGUUCACCUGGCCG--CG-GCc -3'
miRNA:   3'- -GGGu-UUAAGUGGGCUGGCuaGCaCGc -5'
5302 5' -51.8 NC_001798.1 + 72368 0.66 0.992221
Target:  5'- cCCCuGGUcCGCCagcuggagGACgCGAUCGUGCu -3'
miRNA:   3'- -GGGuUUAaGUGGg-------CUG-GCUAGCACGc -5'
5302 5' -51.8 NC_001798.1 + 72659 0.72 0.881415
Target:  5'- gCCCAGGUcUCGCacgaggguaacgugCUGGCCG-UCGUGCGg -3'
miRNA:   3'- -GGGUUUA-AGUG--------------GGCUGGCuAGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 73017 0.71 0.909816
Target:  5'- cCCCA-----GCCCGGCCGcagaccucGUCGUGCu -3'
miRNA:   3'- -GGGUuuaagUGGGCUGGC--------UAGCACGc -5'
5302 5' -51.8 NC_001798.1 + 74017 0.66 0.993131
Target:  5'- cCCCAAcUUCcuggaguACCCGGCgGcgCGcgGCGg -3'
miRNA:   3'- -GGGUUuAAG-------UGGGCUGgCuaGCa-CGC- -5'
5302 5' -51.8 NC_001798.1 + 74700 0.66 0.994125
Target:  5'- aCCCAAAc-CGCCCccCCGAUgaUGUGUGg -3'
miRNA:   3'- -GGGUUUaaGUGGGcuGGCUA--GCACGC- -5'
5302 5' -51.8 NC_001798.1 + 79182 0.66 0.991101
Target:  5'- gCCCugug-CGCCCGGCUgcgggaugaGGUgGUGCGc -3'
miRNA:   3'- -GGGuuuaaGUGGGCUGG---------CUAgCACGC- -5'
5302 5' -51.8 NC_001798.1 + 80866 0.66 0.989857
Target:  5'- aCCGAucUCaACCCGAUCGAaaacgCGUGUc -3'
miRNA:   3'- gGGUUuaAG-UGGGCUGGCUa----GCACGc -5'
5302 5' -51.8 NC_001798.1 + 81014 0.68 0.971711
Target:  5'- cCCCGGAgcCcCCCGGCCccccuGA-CGUGCGg -3'
miRNA:   3'- -GGGUUUaaGuGGGCUGG-----CUaGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 82273 0.67 0.983477
Target:  5'- gCCCGGuugC-CCCGAgCGAgccuUUGUGCGg -3'
miRNA:   3'- -GGGUUuaaGuGGGCUgGCU----AGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 82344 0.66 0.988482
Target:  5'- cCCCAG--UCACCCGcgaccaaacccGCCGcgCGgacGCGc -3'
miRNA:   3'- -GGGUUuaAGUGGGC-----------UGGCuaGCa--CGC- -5'
5302 5' -51.8 NC_001798.1 + 87012 0.68 0.968775
Target:  5'- gCCCAGA--CGCCCu-CCGAggagaucgccaUCGUGCGc -3'
miRNA:   3'- -GGGUUUaaGUGGGcuGGCU-----------AGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 95114 0.69 0.958677
Target:  5'- gCCCGuGAUggccgcgCGCCCGAU-GGUCGUGCu -3'
miRNA:   3'- -GGGU-UUAa------GUGGGCUGgCUAGCACGc -5'
5302 5' -51.8 NC_001798.1 + 97333 0.69 0.962263
Target:  5'- gCCAGGcgacgUCGCCCGACgaucaGAUCGagGCGc -3'
miRNA:   3'- gGGUUUa----AGUGGGCUGg----CUAGCa-CGC- -5'
5302 5' -51.8 NC_001798.1 + 100242 0.68 0.968775
Target:  5'- gCCCG---UCGCCCcgGACaacguGAUCGUGCa -3'
miRNA:   3'- -GGGUuuaAGUGGG--CUGg----CUAGCACGc -5'
5302 5' -51.8 NC_001798.1 + 103008 0.71 0.890457
Target:  5'- gCCCAGGUgCGCCCGGCCaGcgCGaGCu -3'
miRNA:   3'- -GGGUUUAaGUGGGCUGG-CuaGCaCGc -5'
5302 5' -51.8 NC_001798.1 + 105405 0.66 0.994125
Target:  5'- cUCCAGGgcCGCCgCGGCCGcg-GUGCGc -3'
miRNA:   3'- -GGGUUUaaGUGG-GCUGGCuagCACGC- -5'
5302 5' -51.8 NC_001798.1 + 110888 0.7 0.921524
Target:  5'- gUCCAGGU--ACCCGGCgGuucgCGUGCGg -3'
miRNA:   3'- -GGGUUUAagUGGGCUGgCua--GCACGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.