Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5302 | 5' | -51.8 | NC_001798.1 | + | 81014 | 0.68 | 0.971711 |
Target: 5'- cCCCGGAgcCcCCCGGCCccccuGA-CGUGCGg -3' miRNA: 3'- -GGGUUUaaGuGGGCUGG-----CUaGCACGC- -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 132284 | 0.68 | 0.974444 |
Target: 5'- gCCAGGUUCugCCGGCaguuuaCGGaccgCGUGCu -3' miRNA: 3'- gGGUUUAAGugGGCUG------GCUa---GCACGc -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 149157 | 0.68 | 0.974444 |
Target: 5'- cCCCGAgg-CGCCuCGGCCGGUgGUcCGg -3' miRNA: 3'- -GGGUUuaaGUGG-GCUGGCUAgCAcGC- -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 117192 | 0.68 | 0.974444 |
Target: 5'- cCCCGGGUUCGggUUC-ACCG-UCGUGCGg -3' miRNA: 3'- -GGGUUUAAGU--GGGcUGGCuAGCACGC- -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 62488 | 0.68 | 0.976979 |
Target: 5'- cCUCGGAgauacUCAcCCCGcCCGAgcUCGUGCa -3' miRNA: 3'- -GGGUUUa----AGU-GGGCuGGCU--AGCACGc -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 82273 | 0.67 | 0.983477 |
Target: 5'- gCCCGGuugC-CCCGAgCGAgccuUUGUGCGg -3' miRNA: 3'- -GGGUUuaaGuGGGCUgGCU----AGCACGC- -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 121466 | 0.67 | 0.983477 |
Target: 5'- cCCCAGcgcgggcgggcuGUUCGucuCCCuGCCGGUCGcgUGCGa -3' miRNA: 3'- -GGGUU------------UAAGU---GGGcUGGCUAGC--ACGC- -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 133020 | 0.67 | 0.983477 |
Target: 5'- gCCgGAcgUCGCgCCGGCCGAgguggUCGcGCu -3' miRNA: 3'- -GGgUUuaAGUG-GGCUGGCU-----AGCaCGc -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 20246 | 0.67 | 0.983477 |
Target: 5'- uCCCAGGUUcCGCCCGA--GAUC-UGCa -3' miRNA: 3'- -GGGUUUAA-GUGGGCUggCUAGcACGc -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 14037 | 0.67 | 0.9853 |
Target: 5'- aCCCAu----GCCCGGCaCGGggCGUGUGg -3' miRNA: 3'- -GGGUuuaagUGGGCUG-GCUa-GCACGC- -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 29884 | 0.67 | 0.986806 |
Target: 5'- cCCCGGAc-CACCCGGCUgcggguuggggguGGUCGcggGCGg -3' miRNA: 3'- -GGGUUUaaGUGGGCUGG-------------CUAGCa--CGC- -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 82344 | 0.66 | 0.988482 |
Target: 5'- cCCCAG--UCACCCGcgaccaaacccGCCGcgCGgacGCGc -3' miRNA: 3'- -GGGUUuaAGUGGGC-----------UGGCuaGCa--CGC- -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 15971 | 0.66 | 0.988482 |
Target: 5'- cCCCGAcgUCuuCCG-UgGGUCGUGCc -3' miRNA: 3'- -GGGUUuaAGugGGCuGgCUAGCACGc -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 128901 | 0.66 | 0.989726 |
Target: 5'- uUCCGGgcGUUCAUCCGGuccauccccaaccCCGG-CGUGCGc -3' miRNA: 3'- -GGGUU--UAAGUGGGCU-------------GGCUaGCACGC- -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 144895 | 0.66 | 0.989857 |
Target: 5'- aCCAGAUaCGCCCu-CUGggCGUGCc -3' miRNA: 3'- gGGUUUAaGUGGGcuGGCuaGCACGc -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 31131 | 0.66 | 0.989857 |
Target: 5'- cCCCGAAgagCGcCCCGGCgCGGgggCG-GCGg -3' miRNA: 3'- -GGGUUUaa-GU-GGGCUG-GCUa--GCaCGC- -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 80866 | 0.66 | 0.989857 |
Target: 5'- aCCGAucUCaACCCGAUCGAaaacgCGUGUc -3' miRNA: 3'- gGGUUuaAG-UGGGCUGGCUa----GCACGc -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 14106 | 0.66 | 0.991101 |
Target: 5'- cCCCGGg--CACCCGACacacaAUCGggGCGa -3' miRNA: 3'- -GGGUUuaaGUGGGCUGgc---UAGCa-CGC- -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 56382 | 0.66 | 0.991101 |
Target: 5'- gCCCGGA-UCACCUG-CCGcUCG-GUGg -3' miRNA: 3'- -GGGUUUaAGUGGGCuGGCuAGCaCGC- -5' |
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5302 | 5' | -51.8 | NC_001798.1 | + | 48366 | 0.66 | 0.991101 |
Target: 5'- gCCCGGGgcCGCCCcGCgGggCGUGCc -3' miRNA: 3'- -GGGUUUaaGUGGGcUGgCuaGCACGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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