miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5302 5' -51.8 NC_001798.1 + 29884 0.67 0.986806
Target:  5'- cCCCGGAc-CACCCGGCUgcggguuggggguGGUCGcggGCGg -3'
miRNA:   3'- -GGGUUUaaGUGGGCUGG-------------CUAGCa--CGC- -5'
5302 5' -51.8 NC_001798.1 + 14037 0.67 0.9853
Target:  5'- aCCCAu----GCCCGGCaCGGggCGUGUGg -3'
miRNA:   3'- -GGGUuuaagUGGGCUG-GCUa-GCACGC- -5'
5302 5' -51.8 NC_001798.1 + 133020 0.67 0.983477
Target:  5'- gCCgGAcgUCGCgCCGGCCGAgguggUCGcGCu -3'
miRNA:   3'- -GGgUUuaAGUG-GGCUGGCU-----AGCaCGc -5'
5302 5' -51.8 NC_001798.1 + 121466 0.67 0.983477
Target:  5'- cCCCAGcgcgggcgggcuGUUCGucuCCCuGCCGGUCGcgUGCGa -3'
miRNA:   3'- -GGGUU------------UAAGU---GGGcUGGCUAGC--ACGC- -5'
5302 5' -51.8 NC_001798.1 + 82273 0.67 0.983477
Target:  5'- gCCCGGuugC-CCCGAgCGAgccuUUGUGCGg -3'
miRNA:   3'- -GGGUUuaaGuGGGCUgGCU----AGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 20246 0.67 0.983477
Target:  5'- uCCCAGGUUcCGCCCGA--GAUC-UGCa -3'
miRNA:   3'- -GGGUUUAA-GUGGGCUggCUAGcACGc -5'
5302 5' -51.8 NC_001798.1 + 62488 0.68 0.976979
Target:  5'- cCUCGGAgauacUCAcCCCGcCCGAgcUCGUGCa -3'
miRNA:   3'- -GGGUUUa----AGU-GGGCuGGCU--AGCACGc -5'
5302 5' -51.8 NC_001798.1 + 117192 0.68 0.974444
Target:  5'- cCCCGGGUUCGggUUC-ACCG-UCGUGCGg -3'
miRNA:   3'- -GGGUUUAAGU--GGGcUGGCuAGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 149157 0.68 0.974444
Target:  5'- cCCCGAgg-CGCCuCGGCCGGUgGUcCGg -3'
miRNA:   3'- -GGGUUuaaGUGG-GCUGGCUAgCAcGC- -5'
5302 5' -51.8 NC_001798.1 + 132284 0.68 0.974444
Target:  5'- gCCAGGUUCugCCGGCaguuuaCGGaccgCGUGCu -3'
miRNA:   3'- gGGUUUAAGugGGCUG------GCUa---GCACGc -5'
5302 5' -51.8 NC_001798.1 + 81014 0.68 0.971711
Target:  5'- cCCCGGAgcCcCCCGGCCccccuGA-CGUGCGg -3'
miRNA:   3'- -GGGUUUaaGuGGGCUGG-----CUaGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 16769 0.68 0.968775
Target:  5'- gUCCGGGgaCACCCGACCcgccgCGUGUc -3'
miRNA:   3'- -GGGUUUaaGUGGGCUGGcua--GCACGc -5'
5302 5' -51.8 NC_001798.1 + 87012 0.68 0.968775
Target:  5'- gCCCAGA--CGCCCu-CCGAggagaucgccaUCGUGCGc -3'
miRNA:   3'- -GGGUUUaaGUGGGcuGGCU-----------AGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 100242 0.68 0.968775
Target:  5'- gCCCG---UCGCCCcgGACaacguGAUCGUGCa -3'
miRNA:   3'- -GGGUuuaAGUGGG--CUGg----CUAGCACGc -5'
5302 5' -51.8 NC_001798.1 + 147163 0.68 0.965627
Target:  5'- uCCCGGGUagcCGCCCGgcGCCGggCGgaagGCGu -3'
miRNA:   3'- -GGGUUUAa--GUGGGC--UGGCuaGCa---CGC- -5'
5302 5' -51.8 NC_001798.1 + 22859 0.68 0.965627
Target:  5'- aCCCGGAccgUCGCCCcGCCGcgCG-GCc -3'
miRNA:   3'- -GGGUUUa--AGUGGGcUGGCuaGCaCGc -5'
5302 5' -51.8 NC_001798.1 + 154257 0.68 0.965627
Target:  5'- -gCGAAcUCACCCGucCCGGcuggCGUGCGc -3'
miRNA:   3'- ggGUUUaAGUGGGCu-GGCUa---GCACGC- -5'
5302 5' -51.8 NC_001798.1 + 39182 0.68 0.965627
Target:  5'- uCCCAGGaa-ACCCGACgGGUCucgGCGu -3'
miRNA:   3'- -GGGUUUaagUGGGCUGgCUAGca-CGC- -5'
5302 5' -51.8 NC_001798.1 + 97333 0.69 0.962263
Target:  5'- gCCAGGcgacgUCGCCCGACgaucaGAUCGagGCGc -3'
miRNA:   3'- gGGUUUa----AGUGGGCUGg----CUAGCa-CGC- -5'
5302 5' -51.8 NC_001798.1 + 95114 0.69 0.958677
Target:  5'- gCCCGuGAUggccgcgCGCCCGAU-GGUCGUGCu -3'
miRNA:   3'- -GGGU-UUAa------GUGGGCUGgCUAGCACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.