miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5302 5' -51.8 NC_001798.1 + 154257 0.68 0.965627
Target:  5'- -gCGAAcUCACCCGucCCGGcuggCGUGCGc -3'
miRNA:   3'- ggGUUUaAGUGGGCu-GGCUa---GCACGC- -5'
5302 5' -51.8 NC_001798.1 + 149157 0.68 0.974444
Target:  5'- cCCCGAgg-CGCCuCGGCCGGUgGUcCGg -3'
miRNA:   3'- -GGGUUuaaGUGG-GCUGGCUAgCAcGC- -5'
5302 5' -51.8 NC_001798.1 + 147163 0.68 0.965627
Target:  5'- uCCCGGGUagcCGCCCGgcGCCGggCGgaagGCGu -3'
miRNA:   3'- -GGGUUUAa--GUGGGC--UGGCuaGCa---CGC- -5'
5302 5' -51.8 NC_001798.1 + 144895 0.66 0.989857
Target:  5'- aCCAGAUaCGCCCu-CUGggCGUGCc -3'
miRNA:   3'- gGGUUUAaGUGGGcuGGCuaGCACGc -5'
5302 5' -51.8 NC_001798.1 + 133020 0.67 0.983477
Target:  5'- gCCgGAcgUCGCgCCGGCCGAgguggUCGcGCu -3'
miRNA:   3'- -GGgUUuaAGUG-GGCUGGCU-----AGCaCGc -5'
5302 5' -51.8 NC_001798.1 + 132284 0.68 0.974444
Target:  5'- gCCAGGUUCugCCGGCaguuuaCGGaccgCGUGCu -3'
miRNA:   3'- gGGUUUAAGugGGCUG------GCUa---GCACGc -5'
5302 5' -51.8 NC_001798.1 + 131490 0.77 0.624359
Target:  5'- cCCCGGGUcCACCCGAaaacaaCGAUCGaGCGg -3'
miRNA:   3'- -GGGUUUAaGUGGGCUg-----GCUAGCaCGC- -5'
5302 5' -51.8 NC_001798.1 + 128901 0.66 0.989726
Target:  5'- uUCCGGgcGUUCAUCCGGuccauccccaaccCCGG-CGUGCGc -3'
miRNA:   3'- -GGGUU--UAAGUGGGCU-------------GGCUaGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 123466 0.66 0.993226
Target:  5'- aCCCGGG---GCCCGaaGCCGAccUCGUcGCGc -3'
miRNA:   3'- -GGGUUUaagUGGGC--UGGCU--AGCA-CGC- -5'
5302 5' -51.8 NC_001798.1 + 121466 0.67 0.983477
Target:  5'- cCCCAGcgcgggcgggcuGUUCGucuCCCuGCCGGUCGcgUGCGa -3'
miRNA:   3'- -GGGUU------------UAAGU---GGGcUGGCUAGC--ACGC- -5'
5302 5' -51.8 NC_001798.1 + 117192 0.68 0.974444
Target:  5'- cCCCGGGUUCGggUUC-ACCG-UCGUGCGg -3'
miRNA:   3'- -GGGUUUAAGU--GGGcUGGCuAGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 110888 0.7 0.921524
Target:  5'- gUCCAGGU--ACCCGGCgGuucgCGUGCGg -3'
miRNA:   3'- -GGGUUUAagUGGGCUGgCua--GCACGC- -5'
5302 5' -51.8 NC_001798.1 + 105405 0.66 0.994125
Target:  5'- cUCCAGGgcCGCCgCGGCCGcg-GUGCGc -3'
miRNA:   3'- -GGGUUUaaGUGG-GCUGGCuagCACGC- -5'
5302 5' -51.8 NC_001798.1 + 103008 0.71 0.890457
Target:  5'- gCCCAGGUgCGCCCGGCCaGcgCGaGCu -3'
miRNA:   3'- -GGGUUUAaGUGGGCUGG-CuaGCaCGc -5'
5302 5' -51.8 NC_001798.1 + 100242 0.68 0.968775
Target:  5'- gCCCG---UCGCCCcgGACaacguGAUCGUGCa -3'
miRNA:   3'- -GGGUuuaAGUGGG--CUGg----CUAGCACGc -5'
5302 5' -51.8 NC_001798.1 + 97333 0.69 0.962263
Target:  5'- gCCAGGcgacgUCGCCCGACgaucaGAUCGagGCGc -3'
miRNA:   3'- gGGUUUa----AGUGGGCUGg----CUAGCa-CGC- -5'
5302 5' -51.8 NC_001798.1 + 95114 0.69 0.958677
Target:  5'- gCCCGuGAUggccgcgCGCCCGAU-GGUCGUGCu -3'
miRNA:   3'- -GGGU-UUAa------GUGGGCUGgCUAGCACGc -5'
5302 5' -51.8 NC_001798.1 + 87012 0.68 0.968775
Target:  5'- gCCCAGA--CGCCCu-CCGAggagaucgccaUCGUGCGc -3'
miRNA:   3'- -GGGUUUaaGUGGGcuGGCU-----------AGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 82344 0.66 0.988482
Target:  5'- cCCCAG--UCACCCGcgaccaaacccGCCGcgCGgacGCGc -3'
miRNA:   3'- -GGGUUuaAGUGGGC-----------UGGCuaGCa--CGC- -5'
5302 5' -51.8 NC_001798.1 + 82273 0.67 0.983477
Target:  5'- gCCCGGuugC-CCCGAgCGAgccuUUGUGCGg -3'
miRNA:   3'- -GGGUUuaaGuGGGCUgGCU----AGCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.