miRNA display CGI


Results 21 - 40 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 22406 0.73 0.560777
Target:  5'- -aGCCGGGgcgcGGCGGCGucgaucgcuccuccuCCGCGUCCUCc -3'
miRNA:   3'- cgCGGCCU----UCGUUGU---------------GGUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 26243 0.73 0.560777
Target:  5'- cGCGCCGGAcuucugcgaggacgaGGCGcacucGCACCGCG-CCUgCGc -3'
miRNA:   3'- -CGCGGCCU---------------UCGU-----UGUGGUGCaGGA-GC- -5'
5312 3' -56 NC_001798.1 + 19787 0.73 0.566757
Target:  5'- gGCGgCGGGgaAGCGcauuuuucgGCACC-CGUCCUCGc -3'
miRNA:   3'- -CGCgGCCU--UCGU---------UGUGGuGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 113360 0.73 0.576759
Target:  5'- gGCGCCGGcauGUAuuauaGCCGcCGUCCUCGc -3'
miRNA:   3'- -CGCGGCCuu-CGUug---UGGU-GCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 128245 0.73 0.5868
Target:  5'- uCGCUGGAGGCGGCcggcaugguggACCGCGggCUCGg -3'
miRNA:   3'- cGCGGCCUUCGUUG-----------UGGUGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 70548 0.72 0.606972
Target:  5'- cGCGCUGGAGGCcgccgggcugcGCACCACGgcggcCCUgGg -3'
miRNA:   3'- -CGCGGCCUUCGu----------UGUGGUGCa----GGAgC- -5'
5312 3' -56 NC_001798.1 + 42214 0.72 0.626204
Target:  5'- aGCGCCGcGGgucGGCGugcgcggcgacgaACGCCggaACGUCCUCGc -3'
miRNA:   3'- -CGCGGC-CU---UCGU-------------UGUGG---UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 116793 0.72 0.627217
Target:  5'- gGCGCCcgacgcGGgcGcCAACACCGCGUCgaCGg -3'
miRNA:   3'- -CGCGG------CCuuC-GUUGUGGUGCAGgaGC- -5'
5312 3' -56 NC_001798.1 + 3144 0.72 0.646464
Target:  5'- cGCGCCGGccGCcgccaccaccgccGGCGCCGuCGUCgUCGu -3'
miRNA:   3'- -CGCGGCCuuCG-------------UUGUGGU-GCAGgAGC- -5'
5312 3' -56 NC_001798.1 + 144507 0.72 0.647476
Target:  5'- uGCGUCGGAGGCGaguaugccgGCGCCGa--CCUCGc -3'
miRNA:   3'- -CGCGGCCUUCGU---------UGUGGUgcaGGAGC- -5'
5312 3' -56 NC_001798.1 + 16631 0.71 0.656581
Target:  5'- cGCGCCGG-GGCAGgucuugcCGCCcgGCGUCCgCGg -3'
miRNA:   3'- -CGCGGCCuUCGUU-------GUGG--UGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 32794 0.71 0.657592
Target:  5'- cGCGCCGGccGGCGACGCCcccGCGggCCaCGg -3'
miRNA:   3'- -CGCGGCCu-UCGUUGUGG---UGCa-GGaGC- -5'
5312 3' -56 NC_001798.1 + 74751 0.71 0.657592
Target:  5'- cGC-CCGcGAAGCccucggccccgGACGCCGCGgCCUCGg -3'
miRNA:   3'- -CGcGGC-CUUCG-----------UUGUGGUGCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 99245 0.71 0.657592
Target:  5'- -aGCCGGggGUGgcACACCAcCGaCCUCa -3'
miRNA:   3'- cgCGGCCuuCGU--UGUGGU-GCaGGAGc -5'
5312 3' -56 NC_001798.1 + 109445 0.71 0.671718
Target:  5'- uGCgGCUGGAGGCGcGCcucgggcaucuggugGCCGCGaUCCUCGa -3'
miRNA:   3'- -CG-CGGCCUUCGU-UG---------------UGGUGC-AGGAGC- -5'
5312 3' -56 NC_001798.1 + 147259 0.71 0.677755
Target:  5'- cGCGCCGGcGGCGuuuCCGCGUUC-CGu -3'
miRNA:   3'- -CGCGGCCuUCGUuguGGUGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 59682 0.71 0.687786
Target:  5'- cGCGUgGGGgcGGCGggcACGCC-CGUCUUCGg -3'
miRNA:   3'- -CGCGgCCU--UCGU---UGUGGuGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 105651 0.71 0.697772
Target:  5'- -gGCCGGcgccCAACACCACGUUCUUu -3'
miRNA:   3'- cgCGGCCuuc-GUUGUGGUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 76002 0.71 0.697772
Target:  5'- gGCGCCGGcGGCAGgGCCcCGUgCC-CGc -3'
miRNA:   3'- -CGCGGCCuUCGUUgUGGuGCA-GGaGC- -5'
5312 3' -56 NC_001798.1 + 52738 0.71 0.70473
Target:  5'- cGCGCCGcc-GCGgaACAcguggaccuucgccCCGCGUCCUCGg -3'
miRNA:   3'- -CGCGGCcuuCGU--UGU--------------GGUGCAGGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.