miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5314 3' -55.1 NC_001798.1 + 9955 1.06 0.005686
Target:  5'- gGCGUAGUCCUGGAACAGCCGGCGUAc -3'
miRNA:   3'- -CGCAUCAGGACCUUGUCGGCCGCAUc -5'
5314 3' -55.1 NC_001798.1 + 124979 0.78 0.347975
Target:  5'- cGCGUGGUCCccGAGCAGCaCGGCGg-- -3'
miRNA:   3'- -CGCAUCAGGacCUUGUCG-GCCGCauc -5'
5314 3' -55.1 NC_001798.1 + 25805 0.73 0.606587
Target:  5'- cCGUGGaguUCCUGGGGCugcuGGCCGGCGc-- -3'
miRNA:   3'- cGCAUC---AGGACCUUG----UCGGCCGCauc -5'
5314 3' -55.1 NC_001798.1 + 138157 0.72 0.647551
Target:  5'- cGCGcccccgGGUCCUGGGggcgcgacccGCGGCCGGUGc-- -3'
miRNA:   3'- -CGCa-----UCAGGACCU----------UGUCGGCCGCauc -5'
5314 3' -55.1 NC_001798.1 + 27562 0.72 0.688315
Target:  5'- gGCGgcGcCCgcgggGGAGCGGCCGGCu--- -3'
miRNA:   3'- -CGCauCaGGa----CCUUGUCGGCCGcauc -5'
5314 3' -55.1 NC_001798.1 + 16055 0.71 0.718428
Target:  5'- cGCGUGGUaggUCgcugGGGGCGGCgGGCGUc- -3'
miRNA:   3'- -CGCAUCA---GGa---CCUUGUCGgCCGCAuc -5'
5314 3' -55.1 NC_001798.1 + 128240 0.71 0.738148
Target:  5'- uCGU-GUCgCUGGAgGCGGCCGGCaugGUGGa -3'
miRNA:   3'- cGCAuCAG-GACCU-UGUCGGCCG---CAUC- -5'
5314 3' -55.1 NC_001798.1 + 95687 0.7 0.747873
Target:  5'- gGCGgcGgcg-GGGGCGGCCGGCGUc- -3'
miRNA:   3'- -CGCauCaggaCCUUGUCGGCCGCAuc -5'
5314 3' -55.1 NC_001798.1 + 102489 0.7 0.757497
Target:  5'- cGgGUAGUgCgGGGACgGGCCGGCGccgGGg -3'
miRNA:   3'- -CgCAUCAgGaCCUUG-UCGGCCGCa--UC- -5'
5314 3' -55.1 NC_001798.1 + 83937 0.7 0.76701
Target:  5'- cCGUAGucaUCCUGGGACcgccuGGaCCGGCGgcGa -3'
miRNA:   3'- cGCAUC---AGGACCUUG-----UC-GGCCGCauC- -5'
5314 3' -55.1 NC_001798.1 + 74855 0.7 0.776403
Target:  5'- uGCG-GGUCCUGGAggugggggcAguGCCGGUGg-- -3'
miRNA:   3'- -CGCaUCAGGACCU---------UguCGGCCGCauc -5'
5314 3' -55.1 NC_001798.1 + 41443 0.7 0.786585
Target:  5'- gGCGUGGgggguccaugccccgCCggggGGGGCGGUCGGCGg-- -3'
miRNA:   3'- -CGCAUCa--------------GGa---CCUUGUCGGCCGCauc -5'
5314 3' -55.1 NC_001798.1 + 81406 0.7 0.7984
Target:  5'- aUGUGGgccuggauccacggCCUGGAGgAGCUGGCGUc- -3'
miRNA:   3'- cGCAUCa-------------GGACCUUgUCGGCCGCAuc -5'
5314 3' -55.1 NC_001798.1 + 15482 0.69 0.803768
Target:  5'- gGCGggggGGUCgUGGG--GGCUGGUGUGGu -3'
miRNA:   3'- -CGCa---UCAGgACCUugUCGGCCGCAUC- -5'
5314 3' -55.1 NC_001798.1 + 135992 0.69 0.803768
Target:  5'- cGCGUAuGUCCcgggggcggGGAGuCGGUCGGCGUc- -3'
miRNA:   3'- -CGCAU-CAGGa--------CCUU-GUCGGCCGCAuc -5'
5314 3' -55.1 NC_001798.1 + 111533 0.68 0.845353
Target:  5'- gGCGUGGggcUCCUccAGCGcccggucGCCGGCGUAGa -3'
miRNA:   3'- -CGCAUC---AGGAccUUGU-------CGGCCGCAUC- -5'
5314 3' -55.1 NC_001798.1 + 149237 0.68 0.846156
Target:  5'- cCGUGGcCCgcgGGGGCgucgccGGCCGGCGcGGg -3'
miRNA:   3'- cGCAUCaGGa--CCUUG------UCGGCCGCaUC- -5'
5314 3' -55.1 NC_001798.1 + 134257 0.68 0.854079
Target:  5'- uGCGUucuggcGGcCCUGGAGCgccagacgGGCCGGUGg-- -3'
miRNA:   3'- -CGCA------UCaGGACCUUG--------UCGGCCGCauc -5'
5314 3' -55.1 NC_001798.1 + 122092 0.68 0.854079
Target:  5'- gGCGgg--CCUGGAGCcGCCcGGCGgGGg -3'
miRNA:   3'- -CGCaucaGGACCUUGuCGG-CCGCaUC- -5'
5314 3' -55.1 NC_001798.1 + 95923 0.68 0.8618
Target:  5'- gGCG-AGUCCUGGGugGGU--GUGUGGg -3'
miRNA:   3'- -CGCaUCAGGACCUugUCGgcCGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.