miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5314 3' -55.1 NC_001798.1 + 4203 0.67 0.89977
Target:  5'- gGCGUGGUCUgcggcgcuggcgggGGcGCGGgCGGCGUc- -3'
miRNA:   3'- -CGCAUCAGGa-------------CCuUGUCgGCCGCAuc -5'
5314 3' -55.1 NC_001798.1 + 4350 0.67 0.915674
Target:  5'- gGCGgccgAGcgCCggcggGGGGCGcGCCGGCGgcGg -3'
miRNA:   3'- -CGCa---UCa-GGa----CCUUGU-CGGCCGCauC- -5'
5314 3' -55.1 NC_001798.1 + 9955 1.06 0.005686
Target:  5'- gGCGUAGUCCUGGAACAGCCGGCGUAc -3'
miRNA:   3'- -CGCAUCAGGACCUUGUCGGCCGCAUc -5'
5314 3' -55.1 NC_001798.1 + 15482 0.69 0.803768
Target:  5'- gGCGggggGGUCgUGGG--GGCUGGUGUGGu -3'
miRNA:   3'- -CGCa---UCAGgACCUugUCGGCCGCAUC- -5'
5314 3' -55.1 NC_001798.1 + 16055 0.71 0.718428
Target:  5'- cGCGUGGUaggUCgcugGGGGCGGCgGGCGUc- -3'
miRNA:   3'- -CGCAUCA---GGa---CCUUGUCGgCCGCAuc -5'
5314 3' -55.1 NC_001798.1 + 18069 0.67 0.909746
Target:  5'- cGCGUAGUCCUccGGGuaGGCCacgucauccggGGCGUc- -3'
miRNA:   3'- -CGCAUCAGGA--CCUugUCGG-----------CCGCAuc -5'
5314 3' -55.1 NC_001798.1 + 24623 0.67 0.915674
Target:  5'- cGCGggaUCCUGGAGgcGCUGGCGgAGg -3'
miRNA:   3'- -CGCaucAGGACCUUguCGGCCGCaUC- -5'
5314 3' -55.1 NC_001798.1 + 25805 0.73 0.606587
Target:  5'- cCGUGGaguUCCUGGGGCugcuGGCCGGCGc-- -3'
miRNA:   3'- cGCAUC---AGGACCUUG----UCGGCCGCauc -5'
5314 3' -55.1 NC_001798.1 + 27562 0.72 0.688315
Target:  5'- gGCGgcGcCCgcgggGGAGCGGCCGGCu--- -3'
miRNA:   3'- -CGCauCaGGa----CCUUGUCGGCCGcauc -5'
5314 3' -55.1 NC_001798.1 + 28593 0.67 0.909746
Target:  5'- -gGUGG-CCUGGGagACGGCCGcGCGc-- -3'
miRNA:   3'- cgCAUCaGGACCU--UGUCGGC-CGCauc -5'
5314 3' -55.1 NC_001798.1 + 32768 0.66 0.936995
Target:  5'- cCGUGGUCUcgGGAGCAgggcgcgcccgcGCCGGcCGgcGa -3'
miRNA:   3'- cGCAUCAGGa-CCUUGU------------CGGCC-GCauC- -5'
5314 3' -55.1 NC_001798.1 + 39610 0.66 0.921363
Target:  5'- gGCGU--UUCUGGAGaCGcGCCGGCGg-- -3'
miRNA:   3'- -CGCAucAGGACCUU-GU-CGGCCGCauc -5'
5314 3' -55.1 NC_001798.1 + 39884 0.66 0.926814
Target:  5'- cCGgcGUCCUcGGGGCGgGCCGGgGg-- -3'
miRNA:   3'- cGCauCAGGA-CCUUGU-CGGCCgCauc -5'
5314 3' -55.1 NC_001798.1 + 41443 0.7 0.786585
Target:  5'- gGCGUGGgggguccaugccccgCCggggGGGGCGGUCGGCGg-- -3'
miRNA:   3'- -CGCAUCa--------------GGa---CCUUGUCGGCCGCauc -5'
5314 3' -55.1 NC_001798.1 + 52187 0.67 0.897183
Target:  5'- gGCGc-GUCCUGG-ACGuGCUGGCGg-- -3'
miRNA:   3'- -CGCauCAGGACCuUGU-CGGCCGCauc -5'
5314 3' -55.1 NC_001798.1 + 52597 0.66 0.925204
Target:  5'- uGCGUGGcCCUGGccgcguuuGACGGCgGGUcgacggcccccgagGUGGg -3'
miRNA:   3'- -CGCAUCaGGACC--------UUGUCGgCCG--------------CAUC- -5'
5314 3' -55.1 NC_001798.1 + 52864 0.66 0.946224
Target:  5'- aGCG-AGUCCgugcUGGGGCcgcgGGuCCGcGCGUGGa -3'
miRNA:   3'- -CGCaUCAGG----ACCUUG----UC-GGC-CGCAUC- -5'
5314 3' -55.1 NC_001798.1 + 53252 0.66 0.934041
Target:  5'- -gGgcGUCCUGcggcagcgcgccgacGAccuGCAGCCGGCGUu- -3'
miRNA:   3'- cgCauCAGGAC---------------CU---UGUCGGCCGCAuc -5'
5314 3' -55.1 NC_001798.1 + 65870 0.66 0.941266
Target:  5'- -aGUGGUggCCUGGGgguuuaccagguaGCAGCUGGaCGUGu -3'
miRNA:   3'- cgCAUCA--GGACCU-------------UGUCGGCC-GCAUc -5'
5314 3' -55.1 NC_001798.1 + 66756 0.67 0.909746
Target:  5'- aCGUccgCCUGGGguGCGG-CGGCGUGGg -3'
miRNA:   3'- cGCAucaGGACCU--UGUCgGCCGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.