Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5314 | 3' | -55.1 | NC_001798.1 | + | 9955 | 1.06 | 0.005686 |
Target: 5'- gGCGUAGUCCUGGAACAGCCGGCGUAc -3' miRNA: 3'- -CGCAUCAGGACCUUGUCGGCCGCAUc -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 89190 | 0.67 | 0.915674 |
Target: 5'- uUGUGGgCCUGGAugAuGCUGGgGUAc -3' miRNA: 3'- cGCAUCaGGACCUugU-CGGCCgCAUc -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 135043 | 0.67 | 0.909746 |
Target: 5'- cCGUGG-CCUcGGAgGCGGCCGGCc--- -3' miRNA: 3'- cGCAUCaGGA-CCU-UGUCGGCCGcauc -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 66756 | 0.67 | 0.909746 |
Target: 5'- aCGUccgCCUGGGguGCGG-CGGCGUGGg -3' miRNA: 3'- cGCAucaGGACCU--UGUCgGCCGCAUC- -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 28593 | 0.67 | 0.909746 |
Target: 5'- -gGUGG-CCUGGGagACGGCCGcGCGc-- -3' miRNA: 3'- cgCAUCaGGACCU--UGUCGGC-CGCauc -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 18069 | 0.67 | 0.909746 |
Target: 5'- cGCGUAGUCCUccGGGuaGGCCacgucauccggGGCGUc- -3' miRNA: 3'- -CGCAUCAGGA--CCUugUCGG-----------CCGCAuc -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 151588 | 0.67 | 0.903581 |
Target: 5'- gGCGUGGggcugcCCUGGcgcuCGGCCGGgGg-- -3' miRNA: 3'- -CGCAUCa-----GGACCuu--GUCGGCCgCauc -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 4203 | 0.67 | 0.89977 |
Target: 5'- gGCGUGGUCUgcggcgcuggcgggGGcGCGGgCGGCGUc- -3' miRNA: 3'- -CGCAUCAGGa-------------CCuUGUCgGCCGCAuc -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 118816 | 0.67 | 0.897183 |
Target: 5'- cCGUGGaCCUGGGGCucacgcacGCCGGCa--- -3' miRNA: 3'- cGCAUCaGGACCUUGu-------CGGCCGcauc -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 4350 | 0.67 | 0.915674 |
Target: 5'- gGCGgccgAGcgCCggcggGGGGCGcGCCGGCGgcGg -3' miRNA: 3'- -CGCa---UCa-GGa----CCUUGU-CGGCCGCauC- -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 24623 | 0.67 | 0.915674 |
Target: 5'- cGCGggaUCCUGGAGgcGCUGGCGgAGg -3' miRNA: 3'- -CGCaucAGGACCUUguCGGCCGCaUC- -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 39610 | 0.66 | 0.921363 |
Target: 5'- gGCGU--UUCUGGAGaCGcGCCGGCGg-- -3' miRNA: 3'- -CGCAucAGGACCUU-GU-CGGCCGCauc -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 78271 | 0.66 | 0.941728 |
Target: 5'- gGCGUGccCCUGGAccugGCGGCCGccGCGg-- -3' miRNA: 3'- -CGCAUcaGGACCU----UGUCGGC--CGCauc -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 65870 | 0.66 | 0.941266 |
Target: 5'- -aGUGGUggCCUGGGgguuuaccagguaGCAGCUGGaCGUGu -3' miRNA: 3'- cgCAUCA--GGACCU-------------UGUCGGCC-GCAUc -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 32768 | 0.66 | 0.936995 |
Target: 5'- cCGUGGUCUcgGGAGCAgggcgcgcccgcGCCGGcCGgcGa -3' miRNA: 3'- cGCAUCAGGa-CCUUGU------------CGGCC-GCauC- -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 68795 | 0.66 | 0.936509 |
Target: 5'- uGUGUGGccUCCUGGGguccgcuGCAGaCGGCGg-- -3' miRNA: 3'- -CGCAUC--AGGACCU-------UGUCgGCCGCauc -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 53252 | 0.66 | 0.934041 |
Target: 5'- -gGgcGUCCUGcggcagcgcgccgacGAccuGCAGCCGGCGUu- -3' miRNA: 3'- cgCauCAGGAC---------------CU---UGUCGGCCGCAuc -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 141584 | 0.66 | 0.932024 |
Target: 5'- gGCGgcGgcaCgc-GACGGCCGGCGUGGc -3' miRNA: 3'- -CGCauCag-GaccUUGUCGGCCGCAUC- -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 39884 | 0.66 | 0.926814 |
Target: 5'- cCGgcGUCCUcGGGGCGgGCCGGgGg-- -3' miRNA: 3'- cGCauCAGGA-CCUUGU-CGGCCgCauc -5' |
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5314 | 3' | -55.1 | NC_001798.1 | + | 52597 | 0.66 | 0.925204 |
Target: 5'- uGCGUGGcCCUGGccgcguuuGACGGCgGGUcgacggcccccgagGUGGg -3' miRNA: 3'- -CGCAUCaGGACC--------UUGUCGgCCG--------------CAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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