miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5315 5' -62.8 NC_001798.1 + 9445 1.12 0.000544
Target:  5'- uGCCACAGGGACCCGUCGCGCUCCCCCu -3'
miRNA:   3'- -CGGUGUCCCUGGGCAGCGCGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 31558 0.78 0.123124
Target:  5'- uGCCACAgucgucGGGGCgCGcCGCGCgCCCCCg -3'
miRNA:   3'- -CGGUGU------CCCUGgGCaGCGCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 57558 0.78 0.133814
Target:  5'- uCCGCGGGGACgCgGagggggcggcauugcUCGCGUUCCCCCg -3'
miRNA:   3'- cGGUGUCCCUG-GgC---------------AGCGCGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 443 0.78 0.142559
Target:  5'- cGCCACGGGGcugcgguCCCGcggcCGC-CUCCCCCg -3'
miRNA:   3'- -CGGUGUCCCu------GGGCa---GCGcGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 176 0.77 0.157036
Target:  5'- cGCCGCGGGGcugccuuCCCG-CGgGCgCCCCCg -3'
miRNA:   3'- -CGGUGUCCCu------GGGCaGCgCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 154514 0.77 0.157036
Target:  5'- cGCCGCGGGGcugccuuCCCG-CGgGCgCCCCCg -3'
miRNA:   3'- -CGGUGUCCCu------GGGCaGCgCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 34804 0.76 0.176993
Target:  5'- gGCC-CGGGGcCCCGgggccccCGCGCUCCgCCg -3'
miRNA:   3'- -CGGuGUCCCuGGGCa------GCGCGAGGgGG- -5'
5315 5' -62.8 NC_001798.1 + 137913 0.76 0.176993
Target:  5'- cGCCuccgcCGGGcGGCCCG-CGC-CUCCCCCg -3'
miRNA:   3'- -CGGu----GUCC-CUGGGCaGCGcGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 58925 0.76 0.181246
Target:  5'- uCCACAGGG-CCaCGgC-CGCUCCCCCg -3'
miRNA:   3'- cGGUGUCCCuGG-GCaGcGCGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 4044 0.75 0.208704
Target:  5'- cGCCGCGcGGGCCCGgcgGCGCUCCaggcggCCCg -3'
miRNA:   3'- -CGGUGUcCCUGGGCag-CGCGAGG------GGG- -5'
5315 5' -62.8 NC_001798.1 + 154428 0.75 0.220658
Target:  5'- gGCgGCAGGGcagcCCCG-CGCGCccccuuccccgucccUCCCCCg -3'
miRNA:   3'- -CGgUGUCCCu---GGGCaGCGCG---------------AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 90 0.75 0.220658
Target:  5'- gGCgGCAGGGcagcCCCG-CGCGCccccuuccccgucccUCCCCCg -3'
miRNA:   3'- -CGgUGUCCCu---GGGCaGCGCG---------------AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 153242 0.75 0.223736
Target:  5'- gGCgGCGGaGGACCCG-CGCGCcgCCgCCg -3'
miRNA:   3'- -CGgUGUC-CCUGGGCaGCGCGa-GGgGG- -5'
5315 5' -62.8 NC_001798.1 + 110378 0.74 0.228948
Target:  5'- gGCC-CAGGGGCCgGUgGCGggCaCCCCg -3'
miRNA:   3'- -CGGuGUCCCUGGgCAgCGCgaG-GGGG- -5'
5315 5' -62.8 NC_001798.1 + 47814 0.74 0.233726
Target:  5'- cGUCGCGGGcucucacggccccGGCCCcgcgCGCGCUCCUCCa -3'
miRNA:   3'- -CGGUGUCC-------------CUGGGca--GCGCGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 115341 0.74 0.234262
Target:  5'- gGCCACccGGAgcCCCG-CGCGUUCCCUCc -3'
miRNA:   3'- -CGGUGucCCU--GGGCaGCGCGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 20769 0.74 0.234262
Target:  5'- cCCGCGGGGagcgacggcGCCCGcCGCGUaggUCUCCCg -3'
miRNA:   3'- cGGUGUCCC---------UGGGCaGCGCG---AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 5737 0.74 0.2452
Target:  5'- uGCC-CGGGG-CCCGcgucauccCGCGCUCCgCCCc -3'
miRNA:   3'- -CGGuGUCCCuGGGCa-------GCGCGAGG-GGG- -5'
5315 5' -62.8 NC_001798.1 + 4137 0.74 0.250826
Target:  5'- cGCCGCccccGGGGCCC-UCGCGggcaCCCCCg -3'
miRNA:   3'- -CGGUGu---CCCUGGGcAGCGCga--GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 123429 0.73 0.267745
Target:  5'- gGUCACcGGGGcgcccccCCCGaCGCGCgcgCCCCCg -3'
miRNA:   3'- -CGGUGuCCCU-------GGGCaGCGCGa--GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.