miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5315 5' -62.8 NC_001798.1 + 90 0.75 0.220658
Target:  5'- gGCgGCAGGGcagcCCCG-CGCGCccccuuccccgucccUCCCCCg -3'
miRNA:   3'- -CGgUGUCCCu---GGGCaGCGCG---------------AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 176 0.77 0.157036
Target:  5'- cGCCGCGGGGcugccuuCCCG-CGgGCgCCCCCg -3'
miRNA:   3'- -CGGUGUCCCu------GGGCaGCgCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 443 0.78 0.142559
Target:  5'- cGCCACGGGGcugcgguCCCGcggcCGC-CUCCCCCg -3'
miRNA:   3'- -CGGUGUCCCu------GGGCa---GCGcGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 499 0.66 0.63872
Target:  5'- cGCCcCGGGGGCUUccccCGCccCUCCCCCc -3'
miRNA:   3'- -CGGuGUCCCUGGGca--GCGc-GAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 1339 0.67 0.590522
Target:  5'- cGCCGC---GGCCCG-CGCaGCUCCgCCg -3'
miRNA:   3'- -CGGUGuccCUGGGCaGCG-CGAGGgGG- -5'
5315 5' -62.8 NC_001798.1 + 2054 0.66 0.619409
Target:  5'- cGCCAgCAGGcaggacaGCCCGcCGCGCUCggcggaccaCUCCg -3'
miRNA:   3'- -CGGU-GUCCc------UGGGCaGCGCGAG---------GGGG- -5'
5315 5' -62.8 NC_001798.1 + 2501 0.68 0.54111
Target:  5'- cGCCGCGGGGcgcggcgGCCgcggcggcggCGUCggcggggcgggggGCGCggCCCCCg -3'
miRNA:   3'- -CGGUGUCCC-------UGG----------GCAG-------------CGCGa-GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 3505 0.66 0.629063
Target:  5'- gGCCACGGcGGccGCCaCGU-GCGCcaggCCCCa -3'
miRNA:   3'- -CGGUGUC-CC--UGG-GCAgCGCGa---GGGGg -5'
5315 5' -62.8 NC_001798.1 + 3802 0.66 0.629063
Target:  5'- gGCCuCGaaccGGGCCCG-CGC-CUCCUCCg -3'
miRNA:   3'- -CGGuGUc---CCUGGGCaGCGcGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 4044 0.75 0.208704
Target:  5'- cGCCGCGcGGGCCCGgcgGCGCUCCaggcggCCCg -3'
miRNA:   3'- -CGGUGUcCCUGGGCag-CGCGAGG------GGG- -5'
5315 5' -62.8 NC_001798.1 + 4083 0.71 0.348276
Target:  5'- cGCCGCGGGGGUCCGggccggggCGgGCUCggCCCUg -3'
miRNA:   3'- -CGGUGUCCCUGGGCa-------GCgCGAG--GGGG- -5'
5315 5' -62.8 NC_001798.1 + 4137 0.74 0.250826
Target:  5'- cGCCGCccccGGGGCCC-UCGCGggcaCCCCCg -3'
miRNA:   3'- -CGGUGu---CCCUGGGcAGCGCga--GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 5390 0.68 0.532688
Target:  5'- cGUgGCGGcGGCCCGUUGgucgcgccgccgcCGCUCCgCCCg -3'
miRNA:   3'- -CGgUGUCcCUGGGCAGC-------------GCGAGG-GGG- -5'
5315 5' -62.8 NC_001798.1 + 5737 0.74 0.2452
Target:  5'- uGCC-CGGGG-CCCGcgucauccCGCGCUCCgCCCc -3'
miRNA:   3'- -CGGuGUCCCuGGGCa-------GCGCGAGG-GGG- -5'
5315 5' -62.8 NC_001798.1 + 5875 0.68 0.496781
Target:  5'- uGCC-CGGGG-CCCGcgucaucccgCGgGCUCCgCCCc -3'
miRNA:   3'- -CGGuGUCCCuGGGCa---------GCgCGAGG-GGG- -5'
5315 5' -62.8 NC_001798.1 + 7406 0.69 0.487747
Target:  5'- aCC-CAGGGACCCG-CGa---CCCCCa -3'
miRNA:   3'- cGGuGUCCCUGGGCaGCgcgaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 9445 1.12 0.000544
Target:  5'- uGCCACAGGGACCCGUCGCGCUCCCCCu -3'
miRNA:   3'- -CGGUGUCCCUGGGCAGCGCGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 9510 0.72 0.319861
Target:  5'- cGCCACGcgaauguaaguGGGGCCCGUCGCcgaggcccgGCUuuuaaCCgCCCg -3'
miRNA:   3'- -CGGUGU-----------CCCUGGGCAGCG---------CGA-----GG-GGG- -5'
5315 5' -62.8 NC_001798.1 + 10735 0.66 0.619409
Target:  5'- cCCACAGuaguuuguGGGCCCGggUGCGUUCCgCg -3'
miRNA:   3'- cGGUGUC--------CCUGGGCa-GCGCGAGGgGg -5'
5315 5' -62.8 NC_001798.1 + 15830 0.69 0.487747
Target:  5'- cGCCGCccgguucgGGGGGCCCGaacgUCGgGgUcgaCCCCCu -3'
miRNA:   3'- -CGGUG--------UCCCUGGGC----AGCgCgA---GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.