miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5315 5' -62.8 NC_001798.1 + 16180 0.67 0.600132
Target:  5'- cCCGCGGGGACCgGggggacgcaCGgGCcgCCCuCCg -3'
miRNA:   3'- cGGUGUCCCUGGgCa--------GCgCGa-GGG-GG- -5'
5315 5' -62.8 NC_001798.1 + 16607 0.67 0.594363
Target:  5'- gGCC-CAGGGGCUCGUgacggacgaCGCGCcggggcaggucuugCCgCCCg -3'
miRNA:   3'- -CGGuGUCCCUGGGCA---------GCGCGa-------------GG-GGG- -5'
5315 5' -62.8 NC_001798.1 + 16768 0.68 0.532688
Target:  5'- gGUC-CGGGGAcacccgaCCCGcCGCGUgUCCCCg -3'
miRNA:   3'- -CGGuGUCCCU-------GGGCaGCGCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 18259 0.66 0.619409
Target:  5'- gGCC-CGGGGGCCagGUa-CGCaUCCUCCg -3'
miRNA:   3'- -CGGuGUCCCUGGg-CAgcGCG-AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 20267 0.67 0.580939
Target:  5'- uGCaGCAGGcGGCCCcacgUGCGCggCCCCa -3'
miRNA:   3'- -CGgUGUCC-CUGGGca--GCGCGagGGGG- -5'
5315 5' -62.8 NC_001798.1 + 20769 0.74 0.234262
Target:  5'- cCCGCGGGGagcgacggcGCCCGcCGCGUaggUCUCCCg -3'
miRNA:   3'- cGGUGUCCC---------UGGGCaGCGCG---AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 23257 0.67 0.580939
Target:  5'- uCCGCGGGGcguacccggACCCcauggccagccuGUCGcCGCgaCCCCCg -3'
miRNA:   3'- cGGUGUCCC---------UGGG------------CAGC-GCGa-GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 23792 0.69 0.469918
Target:  5'- cGUCAgCGGGGAgCCGUgGCccggggccgGC-CCCCCg -3'
miRNA:   3'- -CGGU-GUCCCUgGGCAgCG---------CGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 24463 0.67 0.549577
Target:  5'- cGCCGCGGGGgugcucgccGCCCuggggcgccugagcGcCGCGCccgCCUCCg -3'
miRNA:   3'- -CGGUGUCCC---------UGGG--------------CaGCGCGa--GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 24700 0.71 0.386258
Target:  5'- cGCCGCGcccccgcgcccGGGGCCCGcggGCGCggccgCCCCg -3'
miRNA:   3'- -CGGUGU-----------CCCUGGGCag-CGCGa----GGGGg -5'
5315 5' -62.8 NC_001798.1 + 24818 0.67 0.552408
Target:  5'- cGCCugcGCGGGGACCUG-CGCGUggCCg- -3'
miRNA:   3'- -CGG---UGUCCCUGGGCaGCGCGagGGgg -5'
5315 5' -62.8 NC_001798.1 + 24915 0.66 0.666673
Target:  5'- uGCCGCGGa-GCCCG-CGCcugcugaGCUCCgCCg -3'
miRNA:   3'- -CGGUGUCccUGGGCaGCG-------CGAGGgGG- -5'
5315 5' -62.8 NC_001798.1 + 25011 0.66 0.619409
Target:  5'- cGCCGCGGccGACUCGcUCGcCGCgcccgCCUCCg -3'
miRNA:   3'- -CGGUGUCc-CUGGGC-AGC-GCGa----GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 25046 0.67 0.552408
Target:  5'- cGCCGCGGGaGGCgCGcaaGCGCaagagCCCCg -3'
miRNA:   3'- -CGGUGUCC-CUGgGCag-CGCGa----GGGGg -5'
5315 5' -62.8 NC_001798.1 + 25091 0.72 0.306319
Target:  5'- cGCCGCcGGGcggcGCCC--CGCGC-CCCCCg -3'
miRNA:   3'- -CGGUGuCCC----UGGGcaGCGCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 25162 0.72 0.333847
Target:  5'- cCCGCGGGGGCC----GCGC-CCCCCg -3'
miRNA:   3'- cGGUGUCCCUGGgcagCGCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 25277 0.66 0.667634
Target:  5'- aGCCGCcGGGGCCCagccacaCGCcgGCgCCCUCg -3'
miRNA:   3'- -CGGUGuCCCUGGGca-----GCG--CGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 25596 0.68 0.533622
Target:  5'- gGCCGCGGGccgcGCCgGgggCGgGCcCCCCCc -3'
miRNA:   3'- -CGGUGUCCc---UGGgCa--GCgCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 26091 0.71 0.386258
Target:  5'- uGCCGCGGGGccaacgugcgguACCgCGUgcgcaCGCGCUUcggCCCCg -3'
miRNA:   3'- -CGGUGUCCC------------UGG-GCA-----GCGCGAG---GGGG- -5'
5315 5' -62.8 NC_001798.1 + 26288 0.67 0.600132
Target:  5'- cGCgCGCuGGGGCCUGggCGCGCcgCUgcggCCCg -3'
miRNA:   3'- -CG-GUGuCCCUGGGCa-GCGCGa-GG----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.