miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5315 5' -62.8 NC_001798.1 + 132143 0.73 0.2744
Target:  5'- cGCCGcCGGGGGCCgG-CGgGCggggcgCCCCCc -3'
miRNA:   3'- -CGGU-GUCCCUGGgCaGCgCGa-----GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 95022 0.73 0.2744
Target:  5'- gGCCugGaggccGGGGCCCG-CGCGCugauggacUCCCUCg -3'
miRNA:   3'- -CGGugU-----CCCUGGGCaGCGCG--------AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 145398 0.73 0.279943
Target:  5'- -aCGCGGGGaaagcgcgcccccGCCCGgccgcCGCGCgCCCCCg -3'
miRNA:   3'- cgGUGUCCC-------------UGGGCa----GCGCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 153400 0.73 0.280564
Target:  5'- gGUCGCGGucGGCCCGcUCGCGCgcccaggaCCCCCg -3'
miRNA:   3'- -CGGUGUCc-CUGGGC-AGCGCGa-------GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 150135 0.72 0.299715
Target:  5'- gGCCGCGGGG-CCCGaguccgaccCGCGCcUCUUCCg -3'
miRNA:   3'- -CGGUGUCCCuGGGCa--------GCGCG-AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 97928 0.72 0.299715
Target:  5'- cGCCACcaGGuGGACCCGgcccUGCUCCCCa -3'
miRNA:   3'- -CGGUG--UC-CCUGGGCagc-GCGAGGGGg -5'
5315 5' -62.8 NC_001798.1 + 25091 0.72 0.306319
Target:  5'- cGCCGCcGGGcggcGCCC--CGCGC-CCCCCg -3'
miRNA:   3'- -CGGUGuCCC----UGGGcaGCGCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 111132 0.72 0.306319
Target:  5'- cGCaGCAGGGcggcgcugucgGCCCGcgCGuCGCUCCCCa -3'
miRNA:   3'- -CGgUGUCCC-----------UGGGCa-GC-GCGAGGGGg -5'
5315 5' -62.8 NC_001798.1 + 9510 0.72 0.319861
Target:  5'- cGCCACGcgaauguaaguGGGGCCCGUCGCcgaggcccgGCUuuuaaCCgCCCg -3'
miRNA:   3'- -CGGUGU-----------CCCUGGGCAGCG---------CGA-----GG-GGG- -5'
5315 5' -62.8 NC_001798.1 + 45401 0.72 0.331721
Target:  5'- gGCCGgAGGGACCCGcacCGCgggGCUuggagcgaccgaggCCCCCc -3'
miRNA:   3'- -CGGUgUCCCUGGGCa--GCG---CGA--------------GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 25162 0.72 0.333847
Target:  5'- cCCGCGGGGGCC----GCGC-CCCCCg -3'
miRNA:   3'- cGGUGUCCCUGGgcagCGCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 141205 0.71 0.348276
Target:  5'- gGCCcgcgggACGGGGGCCCGga-CGaCUUCCCCg -3'
miRNA:   3'- -CGG------UGUCCCUGGGCagcGC-GAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 4083 0.71 0.348276
Target:  5'- cGCCGCGGGGGUCCGggccggggCGgGCUCggCCCUg -3'
miRNA:   3'- -CGGUGUCCCUGGGCa-------GCgCGAG--GGGG- -5'
5315 5' -62.8 NC_001798.1 + 103166 0.71 0.355655
Target:  5'- gGCCacgugcgcaaACAGGGugCgGUCGgGCggaaccucgUCCCCCc -3'
miRNA:   3'- -CGG----------UGUCCCugGgCAGCgCG---------AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 39817 0.71 0.363144
Target:  5'- gGUCGCGGGuGGCggaUCGUCG-GCUCCCCg -3'
miRNA:   3'- -CGGUGUCC-CUG---GGCAGCgCGAGGGGg -5'
5315 5' -62.8 NC_001798.1 + 39460 0.71 0.36617
Target:  5'- cGCCAUcagcggaggGGGGGCCUGgcgCGUGCcucguggccgcgggCCCCCg -3'
miRNA:   3'- -CGGUG---------UCCCUGGGCa--GCGCGa-------------GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 150224 0.71 0.370741
Target:  5'- uGCCGCGGGGGacCCCGgguccucccucCGCGCccggCCCUCc -3'
miRNA:   3'- -CGGUGUCCCU--GGGCa----------GCGCGa---GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 27640 0.71 0.378446
Target:  5'- cGCCGCcGccGCCCGccuUCGCGCcCCCCCc -3'
miRNA:   3'- -CGGUGuCccUGGGC---AGCGCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 47379 0.71 0.378446
Target:  5'- cCCGCAGGGAgCCacUCcCGCggCCCCCg -3'
miRNA:   3'- cGGUGUCCCUgGGc-AGcGCGa-GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 138800 0.71 0.378446
Target:  5'- cGCCccCAGGcGCUgCGUCGC-CUCCCCCu -3'
miRNA:   3'- -CGGu-GUCCcUGG-GCAGCGcGAGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.