miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5315 5' -62.8 NC_001798.1 + 31476 0.66 0.63872
Target:  5'- cGCCGCcccgcGGGcCCCGggcCGCUCUCCUu -3'
miRNA:   3'- -CGGUGu----CCCuGGGCagcGCGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 60516 0.66 0.63872
Target:  5'- uGCgaaACGGGGccugGCCCGUgacCGUcaGCUCCaCCCg -3'
miRNA:   3'- -CGg--UGUCCC----UGGGCA---GCG--CGAGG-GGG- -5'
5315 5' -62.8 NC_001798.1 + 71082 0.66 0.63872
Target:  5'- aGCCGCGucaGCCCGcggucggCGUGCgcgCCCCCg -3'
miRNA:   3'- -CGGUGUcccUGGGCa------GCGCGa--GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 499 0.66 0.63872
Target:  5'- cGCCcCGGGGGCUUccccCGCccCUCCCCCc -3'
miRNA:   3'- -CGGuGUCCCUGGGca--GCGc-GAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 91264 0.66 0.63872
Target:  5'- uGCCggcggcaagGCGGcGGugCCGUCuggGUgGCUCCCCg -3'
miRNA:   3'- -CGG---------UGUC-CCugGGCAG---CG-CGAGGGGg -5'
5315 5' -62.8 NC_001798.1 + 147919 0.66 0.629063
Target:  5'- aGgCGCGGGucgGGCCCGUaCGCcCaccgCCCCCa -3'
miRNA:   3'- -CgGUGUCC---CUGGGCA-GCGcGa---GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 3505 0.66 0.629063
Target:  5'- gGCCACGGcGGccGCCaCGU-GCGCcaggCCCCa -3'
miRNA:   3'- -CGGUGUC-CC--UGG-GCAgCGCGa---GGGGg -5'
5315 5' -62.8 NC_001798.1 + 3802 0.66 0.629063
Target:  5'- gGCCuCGaaccGGGCCCG-CGC-CUCCUCCg -3'
miRNA:   3'- -CGGuGUc---CCUGGGCaGCGcGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 45156 0.66 0.629063
Target:  5'- cGCCACcacccGGGACUCGagG-GCUCCaCCa -3'
miRNA:   3'- -CGGUGu----CCCUGGGCagCgCGAGGgGG- -5'
5315 5' -62.8 NC_001798.1 + 47414 0.66 0.629063
Target:  5'- -aCGCAGG--CCC-UCGCuGCUCUCCCg -3'
miRNA:   3'- cgGUGUCCcuGGGcAGCG-CGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 82312 0.66 0.629063
Target:  5'- uGCC-CGGaGGCCCGguugccCGcCGC-CCCCCa -3'
miRNA:   3'- -CGGuGUCcCUGGGCa-----GC-GCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 69305 0.66 0.629063
Target:  5'- cGCC--GGGGAcggucagcccuCCCGcgCGCcggGCUCCCCUg -3'
miRNA:   3'- -CGGugUCCCU-----------GGGCa-GCG---CGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 2054 0.66 0.619409
Target:  5'- cGCCAgCAGGcaggacaGCCCGcCGCGCUCggcggaccaCUCCg -3'
miRNA:   3'- -CGGU-GUCCc------UGGGCaGCGCGAG---------GGGG- -5'
5315 5' -62.8 NC_001798.1 + 32039 0.66 0.619409
Target:  5'- gGCCACGGGccgcucGCCCcggcGUCcgcggGCGCcgcgCCCCCg -3'
miRNA:   3'- -CGGUGUCCc-----UGGG----CAG-----CGCGa---GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 46406 0.66 0.619409
Target:  5'- gGCCgGCAGGGccaccGCCCccccggcgGUCGCGagcgCCCCg -3'
miRNA:   3'- -CGG-UGUCCC-----UGGG--------CAGCGCga--GGGGg -5'
5315 5' -62.8 NC_001798.1 + 76120 0.66 0.619409
Target:  5'- uCCAcCGGGGAgCCGUauacaGCGCgaaggCCCUg -3'
miRNA:   3'- cGGU-GUCCCUgGGCAg----CGCGa----GGGGg -5'
5315 5' -62.8 NC_001798.1 + 10735 0.66 0.619409
Target:  5'- cCCACAGuaguuuguGGGCCCGggUGCGUUCCgCg -3'
miRNA:   3'- cGGUGUC--------CCUGGGCa-GCGCGAGGgGg -5'
5315 5' -62.8 NC_001798.1 + 18259 0.66 0.619409
Target:  5'- gGCC-CGGGGGCCagGUa-CGCaUCCUCCg -3'
miRNA:   3'- -CGGuGUCCCUGGg-CAgcGCG-AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 109668 0.66 0.619409
Target:  5'- cGCCACGGccguccuccGGGCgCCGUUccuggcggGCGCgCCCUCg -3'
miRNA:   3'- -CGGUGUC---------CCUG-GGCAG--------CGCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 25011 0.66 0.619409
Target:  5'- cGCCGCGGccGACUCGcUCGcCGCgcccgCCUCCg -3'
miRNA:   3'- -CGGUGUCc-CUGGGC-AGC-GCGa----GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.