miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5315 5' -62.8 NC_001798.1 + 154514 0.77 0.157036
Target:  5'- cGCCGCGGGGcugccuuCCCG-CGgGCgCCCCCg -3'
miRNA:   3'- -CGGUGUCCCu------GGGCaGCgCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 154428 0.75 0.220658
Target:  5'- gGCgGCAGGGcagcCCCG-CGCGCccccuuccccgucccUCCCCCg -3'
miRNA:   3'- -CGgUGUCCCu---GGGCaGCGCG---------------AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 154107 0.66 0.648372
Target:  5'- gGCCGgcgcCGGGGAcCCCGgcggCGgGgaCCCCg -3'
miRNA:   3'- -CGGU----GUCCCU-GGGCa---GCgCgaGGGGg -5'
5315 5' -62.8 NC_001798.1 + 153957 0.69 0.443816
Target:  5'- cGCCGCAGGagcgaggacgcGGCCgG-CGCGCUCUCgaCCg -3'
miRNA:   3'- -CGGUGUCC-----------CUGGgCaGCGCGAGGG--GG- -5'
5315 5' -62.8 NC_001798.1 + 153830 0.66 0.667634
Target:  5'- cGCgGCGugcGGGGCCUccgGCGCcuUCCCCCc -3'
miRNA:   3'- -CGgUGU---CCCUGGGcagCGCG--AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 153400 0.73 0.280564
Target:  5'- gGUCGCGGucGGCCCGcUCGCGCgcccaggaCCCCCg -3'
miRNA:   3'- -CGGUGUCc-CUGGGC-AGCGCGa-------GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 153242 0.75 0.223736
Target:  5'- gGCgGCGGaGGACCCG-CGCGCcgCCgCCg -3'
miRNA:   3'- -CGgUGUC-CCUGGGCaGCGCGa-GGgGG- -5'
5315 5' -62.8 NC_001798.1 + 152437 0.68 0.496781
Target:  5'- -aCACGGGGcugccuuauACCCGgCGCcuauccaCUCCCCCa -3'
miRNA:   3'- cgGUGUCCC---------UGGGCaGCGc------GAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 152095 0.67 0.571389
Target:  5'- gGCCGgGGGucGGcCCCGUCaaGCGUccccgCCCCCg -3'
miRNA:   3'- -CGGUgUCC--CU-GGGCAG--CGCGa----GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 151854 0.68 0.515068
Target:  5'- --gGC-GGGACCCc-CGCGCcgugUCCCCCg -3'
miRNA:   3'- cggUGuCCCUGGGcaGCGCG----AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 151168 0.68 0.530823
Target:  5'- gGCCACGGGGgggugggcgacaggGCgCGgacCGUGUgUCCCCCc -3'
miRNA:   3'- -CGGUGUCCC--------------UGgGCa--GCGCG-AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 150675 0.67 0.600132
Target:  5'- cGCCGCGGcGucuucgcccACCCGcgcgccugCGCGCgCCCCCc -3'
miRNA:   3'- -CGGUGUCcC---------UGGGCa-------GCGCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 150465 0.68 0.533622
Target:  5'- gGCCgcGCGGGGGCgCG-CgGCGCgCCCCg -3'
miRNA:   3'- -CGG--UGUCCCUGgGCaG-CGCGaGGGGg -5'
5315 5' -62.8 NC_001798.1 + 150224 0.71 0.370741
Target:  5'- uGCCGCGGGGGacCCCGgguccucccucCGCGCccggCCCUCc -3'
miRNA:   3'- -CGGUGUCCCU--GGGCa----------GCGCGa---GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 150135 0.72 0.299715
Target:  5'- gGCCGCGGGG-CCCGaguccgaccCGCGCcUCUUCCg -3'
miRNA:   3'- -CGGUGUCCCuGGGCa--------GCGCG-AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 149243 0.68 0.524314
Target:  5'- cCCGCGGGGGCgucgccggCCGgcgcgggCGCGCccugCUCCCg -3'
miRNA:   3'- cGGUGUCCCUG--------GGCa------GCGCGa---GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 147919 0.66 0.629063
Target:  5'- aGgCGCGGGucgGGCCCGUaCGCcCaccgCCCCCa -3'
miRNA:   3'- -CgGUGUCC---CUGGGCA-GCGcGa---GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 147057 0.7 0.426874
Target:  5'- gGCCGgAGGGGCCCccgcaccUCG-GCggccgCCCCCu -3'
miRNA:   3'- -CGGUgUCCCUGGGc------AGCgCGa----GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 145544 0.69 0.487747
Target:  5'- cGCC-CGGccGCCCGcgUCGCGCcggcgCCCCCu -3'
miRNA:   3'- -CGGuGUCccUGGGC--AGCGCGa----GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 145489 0.68 0.542988
Target:  5'- cGCCGCGcGcccccGCCCGgccgcCGCGCgCCCCCg -3'
miRNA:   3'- -CGGUGUcCc----UGGGCa----GCGCGaGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.