Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5319 | 5' | -53 | NC_001798.1 | + | 27530 | 0.66 | 0.962268 |
Target: 5'- --gGGAAGGCAgCCCCG--CGGCGcGCGg -3' miRNA: 3'- gaaUUUUCCGU-GGGGUagGCUGC-CGU- -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 149160 | 0.66 | 0.968863 |
Target: 5'- ----cGAGGCGCCUCggCCGGUGGUc -3' miRNA: 3'- gaauuUUCCGUGGGGuaGGCUGCCGu -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 151482 | 0.66 | 0.968863 |
Target: 5'- ----cGGGGCgAUCUCGUCCGugcacACGGCAc -3' miRNA: 3'- gaauuUUCCG-UGGGGUAGGC-----UGCCGU- -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 21644 | 0.66 | 0.968863 |
Target: 5'- ------cGGUGCCCCGcucgCCGcCGGCGu -3' miRNA: 3'- gaauuuuCCGUGGGGUa---GGCuGCCGU- -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 124133 | 0.66 | 0.968863 |
Target: 5'- -----uGGcGCGCCCCcgCCG-UGGCGg -3' miRNA: 3'- gaauuuUC-CGUGGGGuaGGCuGCCGU- -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 76931 | 0.66 | 0.968554 |
Target: 5'- ----cGGGGCcCCCCcccggaaGUCaCGGCGGCGc -3' miRNA: 3'- gaauuUUCCGuGGGG-------UAG-GCUGCCGU- -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 103141 | 0.66 | 0.965677 |
Target: 5'- ----cAAGGCGCCgC--CCGAUGGCGc -3' miRNA: 3'- gaauuUUCCGUGGgGuaGGCUGCCGU- -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 87909 | 0.66 | 0.965677 |
Target: 5'- gUUGAgcGGaaCGCCCCGggCGAUGGCGu -3' miRNA: 3'- gAAUUuuCC--GUGGGGUagGCUGCCGU- -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 28860 | 0.66 | 0.965677 |
Target: 5'- ---cGAGGGCgGCCUCggCCGGCGGa- -3' miRNA: 3'- gaauUUUCCG-UGGGGuaGGCUGCCgu -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 31134 | 0.66 | 0.968863 |
Target: 5'- ---cGAAGaGCGCCCCggCgCGGgGGCGg -3' miRNA: 3'- gaauUUUC-CGUGGGGuaG-GCUgCCGU- -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 3898 | 0.66 | 0.971833 |
Target: 5'- --cGGGGGGCcgGCCCCGggCC-ACGGCu -3' miRNA: 3'- gaaUUUUCCG--UGGGGUa-GGcUGCCGu -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 4366 | 0.66 | 0.971833 |
Target: 5'- --cGGGGGGCGCgCCGg-CGGCGGUg -3' miRNA: 3'- gaaUUUUCCGUGgGGUagGCUGCCGu -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 51219 | 0.66 | 0.977151 |
Target: 5'- -------cGCGCCCCAggUCCGuuACGGCc -3' miRNA: 3'- gaauuuucCGUGGGGU--AGGC--UGCCGu -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 34989 | 0.66 | 0.977151 |
Target: 5'- -----cGGGgGCCCC-UCCGGCcggGGCGc -3' miRNA: 3'- gaauuuUCCgUGGGGuAGGCUG---CCGU- -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 26400 | 0.66 | 0.977151 |
Target: 5'- -----cGGGCGCUgCucgagcCCGACGGCGa -3' miRNA: 3'- gaauuuUCCGUGGgGua----GGCUGCCGU- -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 108108 | 0.66 | 0.974593 |
Target: 5'- -----uGGGC-CCCgGUCUGugGGUg -3' miRNA: 3'- gaauuuUCCGuGGGgUAGGCugCCGu -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 57462 | 0.66 | 0.974593 |
Target: 5'- uCUUGGGGGGCGgggCCgGUuuGGCGGUg -3' miRNA: 3'- -GAAUUUUCCGUg--GGgUAggCUGCCGu -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 106105 | 0.66 | 0.974326 |
Target: 5'- ------cGGCGCCgcgaCCGccgggucugcgguUCCGGCGGCAc -3' miRNA: 3'- gaauuuuCCGUGG----GGU-------------AGGCUGCCGU- -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 31244 | 0.66 | 0.971833 |
Target: 5'- ------cGGCGCCCCGUugCgGGCGGgGg -3' miRNA: 3'- gaauuuuCCGUGGGGUA--GgCUGCCgU- -5' |
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5319 | 5' | -53 | NC_001798.1 | + | 7199 | 0.66 | 0.971833 |
Target: 5'- ------cGGCgACCaUgAUCCGGCGGCGg -3' miRNA: 3'- gaauuuuCCG-UGG-GgUAGGCUGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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