miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 3' -58.1 NC_001798.1 + 114272 0.67 0.75552
Target:  5'- -uGGAGcucgGCCUGuccguGGCGUGCGugUGCAc -3'
miRNA:   3'- cuCCUC----UGGGCu----CCGUACGUugGCGU- -5'
5326 3' -58.1 NC_001798.1 + 109451 0.66 0.81905
Target:  5'- -uGGAGGCgCGccucGGGCAUcugGUGGCCGCGa -3'
miRNA:   3'- cuCCUCUGgGC----UCCGUA---CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 109197 0.66 0.82752
Target:  5'- gGGGGAGgACCCG-GGCuccgGCAcggACgCGCGu -3'
miRNA:   3'- -CUCCUC-UGGGCuCCGua--CGU---UG-GCGU- -5'
5326 3' -58.1 NC_001798.1 + 108702 0.66 0.796261
Target:  5'- -cGGGGACaCCGAGGCAUcCGACgacgaaccugagcauCGCGc -3'
miRNA:   3'- cuCCUCUG-GGCUCCGUAcGUUG---------------GCGU- -5'
5326 3' -58.1 NC_001798.1 + 105194 0.68 0.716656
Target:  5'- cGGcGGGGCCCGcGGUggGCGACgGCGc -3'
miRNA:   3'- cUC-CUCUGGGCuCCGuaCGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 103452 0.66 0.81905
Target:  5'- aGGGGGuucuCCgGAGGCAg--GGCCGCAc -3'
miRNA:   3'- cUCCUCu---GGgCUCCGUacgUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 101971 0.77 0.235068
Target:  5'- aGAGGAGGCCCcgggGGGGCGaugUGCGGCgGCGg -3'
miRNA:   3'- -CUCCUCUGGG----CUCCGU---ACGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 101911 0.66 0.81905
Target:  5'- gGAGcGGGACCgGGGGUAaccGCAACUGgGg -3'
miRNA:   3'- -CUC-CUCUGGgCUCCGUa--CGUUGGCgU- -5'
5326 3' -58.1 NC_001798.1 + 100745 0.69 0.615717
Target:  5'- uGGGGGACuuGGGGCGcGCGGuCgGCAa -3'
miRNA:   3'- cUCCUCUGggCUCCGUaCGUU-GgCGU- -5'
5326 3' -58.1 NC_001798.1 + 99758 0.66 0.801613
Target:  5'- cGGGAuGCCCgcGAGGcCAU-CGACCGCAu -3'
miRNA:   3'- cUCCUcUGGG--CUCC-GUAcGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 97612 0.66 0.822459
Target:  5'- -cGGAGAgCUGGGGCGacaucgcgacgcggGCcGCCGCGg -3'
miRNA:   3'- cuCCUCUgGGCUCCGUa-------------CGuUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 96062 0.69 0.666535
Target:  5'- aGAGGGGAUgucaGGGGCccGCcGCCGCAu -3'
miRNA:   3'- -CUCCUCUGgg--CUCCGuaCGuUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 94004 0.69 0.646233
Target:  5'- uGGGGAGGCUgGAGaCGauuaucgGCAACCGCGa -3'
miRNA:   3'- -CUCCUCUGGgCUCcGUa------CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 87154 0.66 0.82752
Target:  5'- -uGGGGAUCgGGGGC-UGCugccCCGCGu -3'
miRNA:   3'- cuCCUCUGGgCUCCGuACGuu--GGCGU- -5'
5326 3' -58.1 NC_001798.1 + 86426 0.68 0.706739
Target:  5'- cGAGGcGGAcCCCGAGGC--GCAGCC-CGg -3'
miRNA:   3'- -CUCC-UCU-GGGCUCCGuaCGUUGGcGU- -5'
5326 3' -58.1 NC_001798.1 + 84052 0.68 0.696759
Target:  5'- cGAGcuGcACCCGGGGCAUGCGcACaaaGCAg -3'
miRNA:   3'- -CUCcuC-UGGGCUCCGUACGU-UGg--CGU- -5'
5326 3' -58.1 NC_001798.1 + 83864 0.7 0.58531
Target:  5'- -uGGcGGGCCCGAGGCG-GCGACCc-- -3'
miRNA:   3'- cuCC-UCUGGGCUCCGUaCGUUGGcgu -5'
5326 3' -58.1 NC_001798.1 + 79535 0.78 0.203074
Target:  5'- -cGGAGACCCGGGGCcccUGguGCUGCGu -3'
miRNA:   3'- cuCCUCUGGGCUCCGu--ACguUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 79307 0.74 0.378139
Target:  5'- gGAGGAGuuCCGGGGCGcGCGggaacucauccaauACCGCAu -3'
miRNA:   3'- -CUCCUCugGGCUCCGUaCGU--------------UGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 79249 0.71 0.543282
Target:  5'- uGGGGGGCCUGcuGGCGgaguucgacgcgGCGGCCGCGg -3'
miRNA:   3'- cUCCUCUGGGCu-CCGUa-----------CGUUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.