miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 5' -55.1 NC_001798.1 + 142172 0.66 0.946224
Target:  5'- aGgGACGCG-CGCGguucugacGCGGGGUc -3'
miRNA:   3'- gUgCUGUGCuGCGCaaaa----CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 154396 0.66 0.946224
Target:  5'- gGgGGCGCGAagGCGggcgGCGGcGGCGg -3'
miRNA:   3'- gUgCUGUGCUg-CGCaaaaCGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 59670 0.66 0.946224
Target:  5'- gGCGACuCGGCucGCGUggggGCGgcGGGCAc -3'
miRNA:   3'- gUGCUGuGCUG--CGCAaaa-CGC--CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 6056 0.66 0.946224
Target:  5'- --aGACGcCGGCgGCGa---GCGGGGCAc -3'
miRNA:   3'- gugCUGU-GCUG-CGCaaaaCGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 58 0.66 0.946224
Target:  5'- gGgGGCGCGAagGCGggcgGCGGcGGCGg -3'
miRNA:   3'- gUgCUGUGCUg-CGCaaaaCGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 52513 0.66 0.945785
Target:  5'- gACGACGCGgcggccgcGCGCGccgUGCuggcgacGGGGCu -3'
miRNA:   3'- gUGCUGUGC--------UGCGCaaaACG-------CCCCGu -5'
5327 5' -55.1 NC_001798.1 + 36396 0.66 0.942188
Target:  5'- gCGCGGCGcCGGgGCcccccugccggGCGGGGCGg -3'
miRNA:   3'- -GUGCUGU-GCUgCGcaaaa------CGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 96329 0.66 0.941728
Target:  5'- aCGCGcucCAgGuGCGCGUgcUGCGGcGGCAc -3'
miRNA:   3'- -GUGCu--GUgC-UGCGCAaaACGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 2628 0.66 0.941728
Target:  5'- gGCGGCGCccuGGC-CGgg--GCGGGGCu -3'
miRNA:   3'- gUGCUGUG---CUGcGCaaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 14995 0.66 0.936995
Target:  5'- gGgGGgGCGAgGCGUgUUG-GGGGCGa -3'
miRNA:   3'- gUgCUgUGCUgCGCAaAACgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 24536 0.66 0.936995
Target:  5'- gACGACgACGACGaCGgcgccgGCGGuGGUg -3'
miRNA:   3'- gUGCUG-UGCUGC-GCaaaa--CGCC-CCGu -5'
5327 5' -55.1 NC_001798.1 + 87373 0.66 0.936995
Target:  5'- aCACGAUcCuGCGCGgag-GgGGGGCGu -3'
miRNA:   3'- -GUGCUGuGcUGCGCaaaaCgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 125476 0.66 0.936995
Target:  5'- cCACGGuCugGugGCGcUUgggcgucGCGGuGGCAa -3'
miRNA:   3'- -GUGCU-GugCugCGCaAAa------CGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 49372 0.66 0.936509
Target:  5'- cUACGAggcCAUGGCGCaGUUUuuccgcggugagcUGCGGGcGCGg -3'
miRNA:   3'- -GUGCU---GUGCUGCG-CAAA-------------ACGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 53108 0.66 0.932024
Target:  5'- gGCG-CGCGGCGCGagcucccUGCGGcuGGCGc -3'
miRNA:   3'- gUGCuGUGCUGCGCaaa----ACGCC--CCGU- -5'
5327 5' -55.1 NC_001798.1 + 9664 0.66 0.932024
Target:  5'- cCGCG-CGCGgaggGCGCGggaUGgGGGGCu -3'
miRNA:   3'- -GUGCuGUGC----UGCGCaaaACgCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 31145 0.66 0.932024
Target:  5'- -cCGGCGCgGGgGCGgcggUGCGgGGGCGa -3'
miRNA:   3'- guGCUGUG-CUgCGCaaa-ACGC-CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 126100 0.66 0.932024
Target:  5'- cCGCGGCGa-ACGCGUcucUGUGGGGgGa -3'
miRNA:   3'- -GUGCUGUgcUGCGCAaa-ACGCCCCgU- -5'
5327 5' -55.1 NC_001798.1 + 50077 0.66 0.926814
Target:  5'- gACGACgAUGACGCucc-UGCGGaGGCc -3'
miRNA:   3'- gUGCUG-UGCUGCGcaaaACGCC-CCGu -5'
5327 5' -55.1 NC_001798.1 + 111496 0.66 0.923024
Target:  5'- gCACGGCGCGgaccuccucGCGCGUcaaucccgacucggcGUGGGGCu -3'
miRNA:   3'- -GUGCUGUGC---------UGCGCAaaa------------CGCCCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.