miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 5' -55.1 NC_001798.1 + 21963 0.68 0.846156
Target:  5'- gCGCGGgAUGACGCGggccccggGCaGGGCGc -3'
miRNA:   3'- -GUGCUgUGCUGCGCaaaa----CGcCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 40201 0.68 0.846156
Target:  5'- aGCGGCAcCGACGCGcaac-CGGGGUc -3'
miRNA:   3'- gUGCUGU-GCUGCGCaaaacGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 148438 0.68 0.854079
Target:  5'- --gGGCACGG-GCGUaagUGCGGGuGCAu -3'
miRNA:   3'- gugCUGUGCUgCGCAaa-ACGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 154055 0.68 0.8618
Target:  5'- gCGCGGCACGGCuggaGCGc----CGGGGCGc -3'
miRNA:   3'- -GUGCUGUGCUG----CGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 4212 0.68 0.8618
Target:  5'- uGCGGCGCuGGCGgGg---GCGcGGGCGg -3'
miRNA:   3'- gUGCUGUG-CUGCgCaaaaCGC-CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 97467 0.68 0.8618
Target:  5'- gCGCGGCugggggccgGCGGCGCGaccgGgGGGGCc -3'
miRNA:   3'- -GUGCUG---------UGCUGCGCaaaaCgCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 26335 0.68 0.8618
Target:  5'- uGgGGCGCGACGcCGUgc-GCGGcGGCc -3'
miRNA:   3'- gUgCUGUGCUGC-GCAaaaCGCC-CCGu -5'
5327 5' -55.1 NC_001798.1 + 7991 0.68 0.869314
Target:  5'- gCACG-CGuCGACGUGUUccuacGCGGGGUu -3'
miRNA:   3'- -GUGCuGU-GCUGCGCAAaa---CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 48349 0.68 0.869314
Target:  5'- -uCGACGCGAcCGCGgccgccCGGGGCc -3'
miRNA:   3'- guGCUGUGCU-GCGCaaaac-GCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 54715 0.68 0.876614
Target:  5'- cUACGACGCGGUGCGgaccUG-GGGGCc -3'
miRNA:   3'- -GUGCUGUGCUGCGCaaa-ACgCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 97815 0.68 0.876614
Target:  5'- uCGCGGCGCGcGCGCGcUUcUGCGcccugacggcGGGCGc -3'
miRNA:   3'- -GUGCUGUGC-UGCGC-AAaACGC----------CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 16622 0.68 0.883695
Target:  5'- gACGG-ACGACGCGc----CGGGGCAg -3'
miRNA:   3'- gUGCUgUGCUGCGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 24569 0.68 0.883695
Target:  5'- gGCGGC-CGGCGCGcggagGCGGGccGCGu -3'
miRNA:   3'- gUGCUGuGCUGCGCaaaa-CGCCC--CGU- -5'
5327 5' -55.1 NC_001798.1 + 58984 0.68 0.883695
Target:  5'- gGCGGCcggGCGaACGCGg---GgGGGGCGc -3'
miRNA:   3'- gUGCUG---UGC-UGCGCaaaaCgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 1627 0.68 0.883695
Target:  5'- cCGCGGCagaggcgcagcgGCGGCGCGU----CGGGGUAc -3'
miRNA:   3'- -GUGCUG------------UGCUGCGCAaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 135958 0.67 0.888519
Target:  5'- gCugGACGCggagcaauacuggaGACGCGUcgUGCgcguaugucccgGGGGCGg -3'
miRNA:   3'- -GugCUGUG--------------CUGCGCAaaACG------------CCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 19842 0.67 0.890553
Target:  5'- gCGCGACACG-CGCc-----CGGGGCGg -3'
miRNA:   3'- -GUGCUGUGCuGCGcaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 11589 0.67 0.890553
Target:  5'- uCGCuGGC-CGAuCGCGUggaauuggGCGGGGCu -3'
miRNA:   3'- -GUG-CUGuGCU-GCGCAaaa-----CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 83351 0.67 0.897183
Target:  5'- cCGCGGCGuCGccCGCGaacauaggcUGCGGGGCGa -3'
miRNA:   3'- -GUGCUGU-GCu-GCGCaaa------ACGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 39420 0.67 0.897183
Target:  5'- cCGgGGCGCGGC-CGUccgcgUGCGGGGgGg -3'
miRNA:   3'- -GUgCUGUGCUGcGCAaa---ACGCCCCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.