Results 1 - 20 of 100 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 153691 | 0.65 | 0.926621 |
Target: 5'- -gCGGGGGcCGCCGccggcgcaggcuCAGgcGCGCCa -3' miRNA: 3'- caGCCCCU-GCGGUuu----------GUCuuCGUGGa -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 39705 | 0.66 | 0.91182 |
Target: 5'- cUCGGGGAUGCgGugccuuggucGACGGggGUuggaugcggGCCa -3' miRNA: 3'- cAGCCCCUGCGgU----------UUGUCuuCG---------UGGa -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 39441 | 0.66 | 0.91182 |
Target: 5'- -gCGGGGgggucagggacaGCGCCAucAGCGGAgggGGgGCCUg -3' miRNA: 3'- caGCCCC------------UGCGGU--UUGUCU---UCgUGGA- -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 147009 | 0.66 | 0.905693 |
Target: 5'- cUCGGGGACccCCGGGCGGGccggGGCuugGCCg -3' miRNA: 3'- cAGCCCCUGc-GGUUUGUCU----UCG---UGGa -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 146419 | 0.66 | 0.905693 |
Target: 5'- -aCGGGGcgaGCCGGGCAGAGuGCggaGCCc -3' miRNA: 3'- caGCCCCug-CGGUUUGUCUU-CG---UGGa -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 135860 | 0.66 | 0.905693 |
Target: 5'- uUCGGGaGGCGUCuGGACGcGGAGUACUg -3' miRNA: 3'- cAGCCC-CUGCGG-UUUGU-CUUCGUGGa -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 49980 | 0.66 | 0.905693 |
Target: 5'- cUCGGaGGGCGaguCCGucauGCGGGAGCACg- -3' miRNA: 3'- cAGCC-CCUGC---GGUu---UGUCUUCGUGga -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 76493 | 0.66 | 0.899327 |
Target: 5'- cUCGGGGcugGCCGAACuGcAGCGCUUc -3' miRNA: 3'- cAGCCCCug-CGGUUUGuCuUCGUGGA- -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 77403 | 0.66 | 0.899327 |
Target: 5'- gGUCGGcGGcCGCCGAccugguagucCAGgcGCGCCg -3' miRNA: 3'- -CAGCC-CCuGCGGUUu---------GUCuuCGUGGa -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 29379 | 0.66 | 0.91182 |
Target: 5'- -cCGGGGGCGggcaCCAcuCAGGGccGCGCCg -3' miRNA: 3'- caGCCCCUGC----GGUuuGUCUU--CGUGGa -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 124890 | 0.66 | 0.91182 |
Target: 5'- -aCGGuGGCGCgCuGGCGGAAGUGCCg -3' miRNA: 3'- caGCCcCUGCG-GuUUGUCUUCGUGGa -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 113339 | 0.66 | 0.91182 |
Target: 5'- ---cGGGugGaCCGGACGGGcgguGGCGCCg -3' miRNA: 3'- cagcCCCugC-GGUUUGUCU----UCGUGGa -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 27148 | 0.66 | 0.923351 |
Target: 5'- -aCGGGG-CGCgGGAgGGAggGGCugCUg -3' miRNA: 3'- caGCCCCuGCGgUUUgUCU--UCGugGA- -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 32323 | 0.66 | 0.923351 |
Target: 5'- -gCGGGGGCcgaggaaguguGCCAGGaAGAcGCGCCa -3' miRNA: 3'- caGCCCCUG-----------CGGUUUgUCUuCGUGGa -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 10286 | 0.66 | 0.923351 |
Target: 5'- cGUCGGGGGgGC--GACGGggGgACg- -3' miRNA: 3'- -CAGCCCCUgCGguUUGUCuuCgUGga -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 116521 | 0.66 | 0.917707 |
Target: 5'- -gCGGGGGCGCU--GCu---GCACCg -3' miRNA: 3'- caGCCCCUGCGGuuUGucuuCGUGGa -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 54383 | 0.66 | 0.917707 |
Target: 5'- -cCGGGGG-GCCGcggcgcggucGGCGGGAGCuGCCg -3' miRNA: 3'- caGCCCCUgCGGU----------UUGUCUUCG-UGGa -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 94579 | 0.66 | 0.917707 |
Target: 5'- -gCGcGGGuCGCCAGccucCAGA-GCGCCUa -3' miRNA: 3'- caGC-CCCuGCGGUUu---GUCUuCGUGGA- -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 78947 | 0.66 | 0.917707 |
Target: 5'- gGUCuGGGGuCGCUuuGGCcgcguccggGGggGCGCCUg -3' miRNA: 3'- -CAG-CCCCuGCGGu-UUG---------UCuuCGUGGA- -5' |
|||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 73256 | 0.66 | 0.914204 |
Target: 5'- -cCGGGGACcuggaggcccaagauGCC-GGCGGuAGCACCc -3' miRNA: 3'- caGCCCCUG---------------CGGuUUGUCuUCGUGGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home