miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5351 3' -55.5 NC_001798.1 + 154074 0.67 0.885891
Target:  5'- -nCGGGGcGCGgCAcGGCuGGAGCGCCg -3'
miRNA:   3'- caGCCCC-UGCgGU-UUGuCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 154050 0.67 0.86404
Target:  5'- -cCGGGGcGCGgCAcGGCuGGAGCGCCg -3'
miRNA:   3'- caGCCCC-UGCgGU-UUGuCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 153691 0.65 0.926621
Target:  5'- -gCGGGGGcCGCCGccggcgcaggcuCAGgcGCGCCa -3'
miRNA:   3'- caGCCCCU-GCGGUuu----------GUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 151841 0.67 0.871544
Target:  5'- -gCGcGGGGCGUgAGGCGGGAcccccGCGCCg -3'
miRNA:   3'- caGC-CCCUGCGgUUUGUCUU-----CGUGGa -5'
5351 3' -55.5 NC_001798.1 + 150833 0.73 0.536403
Target:  5'- -cCGcGGGGCGCCA---GGggGCGCCg -3'
miRNA:   3'- caGC-CCCUGCGGUuugUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 150455 0.67 0.871544
Target:  5'- -gCGGGGcgACgGCCGcGCGGggGCGCg- -3'
miRNA:   3'- caGCCCC--UG-CGGUuUGUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 149966 0.69 0.769054
Target:  5'- -aCGGaGACGCC-GACGGggGCGCg- -3'
miRNA:   3'- caGCCcCUGCGGuUUGUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 149415 0.67 0.892725
Target:  5'- aGUCGGGGG-GCCucacGCAGuuGCGCg- -3'
miRNA:   3'- -CAGCCCCUgCGGuu--UGUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 149246 0.68 0.81479
Target:  5'- -gCGGGGGCGUCGccggccggcGCGGgcGCGCCc -3'
miRNA:   3'- caGCCCCUGCGGUu--------UGUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 147489 0.71 0.659189
Target:  5'- --gGGGGAC-CCAGGCuccgggggggGGggGCGCCUg -3'
miRNA:   3'- cagCCCCUGcGGUUUG----------UCuuCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 147009 0.66 0.905693
Target:  5'- cUCGGGGACccCCGGGCGGGccggGGCuugGCCg -3'
miRNA:   3'- cAGCCCCUGc-GGUUUGUCU----UCG---UGGa -5'
5351 3' -55.5 NC_001798.1 + 146828 0.68 0.81479
Target:  5'- -cCGGGGGCGCggCAGcaacgaacGCAGggGCccGCCg -3'
miRNA:   3'- caGCCCCUGCG--GUU--------UGUCuuCG--UGGa -5'
5351 3' -55.5 NC_001798.1 + 146419 0.66 0.905693
Target:  5'- -aCGGGGcgaGCCGGGCAGAGuGCggaGCCc -3'
miRNA:   3'- caGCCCCug-CGGUUUGUCUU-CG---UGGa -5'
5351 3' -55.5 NC_001798.1 + 144541 0.67 0.878829
Target:  5'- cGUCGGGGAgaccCGCCGuGgGGggGCGu-- -3'
miRNA:   3'- -CAGCCCCU----GCGGUuUgUCuuCGUgga -5'
5351 3' -55.5 NC_001798.1 + 143981 0.68 0.838632
Target:  5'- cGUCGGGGuaacaauuuuuaacCGCCGccagcacguuccguaGACucGGAGGCACCg -3'
miRNA:   3'- -CAGCCCCu-------------GCGGU---------------UUG--UCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 142949 0.77 0.355084
Target:  5'- -aCGGGGACgGCCGGGCAGAGcCGCCc -3'
miRNA:   3'- caGCCCCUG-CGGUUUGUCUUcGUGGa -5'
5351 3' -55.5 NC_001798.1 + 135860 0.66 0.905693
Target:  5'- uUCGGGaGGCGUCuGGACGcGGAGUACUg -3'
miRNA:   3'- cAGCCC-CUGCGG-UUUGU-CUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 135222 0.76 0.413635
Target:  5'- cUCGGGGAgGCCGGGCugccGGAAGC-CCg -3'
miRNA:   3'- cAGCCCCUgCGGUUUG----UCUUCGuGGa -5'
5351 3' -55.5 NC_001798.1 + 132148 0.68 0.848402
Target:  5'- -cCGGGGGcCGgCGGGCGG-GGCGCCc -3'
miRNA:   3'- caGCCCCU-GCgGUUUGUCuUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 132056 0.67 0.892725
Target:  5'- aUCGGGGAguaCGCCAugccCGGAuuuucggcGCGCCg -3'
miRNA:   3'- cAGCCCCU---GCGGUuu--GUCUu-------CGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.