miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5361 3' -58.2 NC_001798.1 + 154087 0.71 0.527478
Target:  5'- -cGGCuGGAGCGCcGGGGCGCgGCCgGc -3'
miRNA:   3'- uaCUG-UCUUGCGuCUCCGCGgUGGgC- -5'
5361 3' -58.2 NC_001798.1 + 153681 0.76 0.272578
Target:  5'- -gGGCgGGGACGCGGGGGcCGCCGCCgGc -3'
miRNA:   3'- uaCUG-UCUUGCGUCUCC-GCGGUGGgC- -5'
5361 3' -58.2 NC_001798.1 + 153078 0.73 0.433704
Target:  5'- -gGGCGGAGCgGCGGGgcGGCGCCggGCCCu -3'
miRNA:   3'- uaCUGUCUUG-CGUCU--CCGCGG--UGGGc -5'
5361 3' -58.2 NC_001798.1 + 153041 0.76 0.272578
Target:  5'- -cGGCGGcGCGCGGuuggccGGCGCCGCCCc -3'
miRNA:   3'- uaCUGUCuUGCGUCu-----CCGCGGUGGGc -5'
5361 3' -58.2 NC_001798.1 + 151185 0.66 0.785191
Target:  5'- -cGACAGGGCGCGGAccGuGUGUCcCCCc -3'
miRNA:   3'- uaCUGUCUUGCGUCU--C-CGCGGuGGGc -5'
5361 3' -58.2 NC_001798.1 + 150834 0.72 0.442657
Target:  5'- --cGCGGGGCGCcaGGGGGCGCCGgUCGg -3'
miRNA:   3'- uacUGUCUUGCG--UCUCCGCGGUgGGC- -5'
5361 3' -58.2 NC_001798.1 + 150461 0.72 0.46087
Target:  5'- -cGACGGccGCGCGGGGGCGCgcggcgCGCCCc -3'
miRNA:   3'- uaCUGUCu-UGCGUCUCCGCG------GUGGGc -5'
5361 3' -58.2 NC_001798.1 + 149964 0.73 0.416119
Target:  5'- -cGACGGAgACGCcgacGGGGGCGCggCGCCCGc -3'
miRNA:   3'- uaCUGUCU-UGCG----UCUCCGCG--GUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 149462 0.73 0.407492
Target:  5'- -cGGCGGcuccACGCGGGGGcCGCgGCCCGc -3'
miRNA:   3'- uaCUGUCu---UGCGUCUCC-GCGgUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 149238 0.69 0.637971
Target:  5'- cGUGGCc---CGCGGGGGCGUCGCCgGc -3'
miRNA:   3'- -UACUGucuuGCGUCUCCGCGGUGGgC- -5'
5361 3' -58.2 NC_001798.1 + 147227 0.79 0.17115
Target:  5'- -cGGCGGAGCGCGGGGGCcccggggccccggGCCGCgCCGg -3'
miRNA:   3'- uaCUGUCUUGCGUCUCCG-------------CGGUG-GGC- -5'
5361 3' -58.2 NC_001798.1 + 146837 0.73 0.416119
Target:  5'- -cGGCAgcaacGAACGCAGGGGCccGCCGCCg- -3'
miRNA:   3'- uaCUGU-----CUUGCGUCUCCG--CGGUGGgc -5'
5361 3' -58.2 NC_001798.1 + 145389 0.66 0.794253
Target:  5'- -cGAgGGGcgACGCGGGGaaagcGCGCCcccGCCCGg -3'
miRNA:   3'- uaCUgUCU--UGCGUCUC-----CGCGG---UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 143493 0.67 0.773209
Target:  5'- -gGAUAGuaAACGCAGAGGgGaCCcucucuucccccacGCCCGa -3'
miRNA:   3'- uaCUGUC--UUGCGUCUCCgC-GG--------------UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 142483 0.66 0.793353
Target:  5'- -gGACGGcccccgaggcGGCGCGGGGGUGCgauaacgCACCCc -3'
miRNA:   3'- uaCUGUC----------UUGCGUCUCCGCG-------GUGGGc -5'
5361 3' -58.2 NC_001798.1 + 135936 0.66 0.820539
Target:  5'- -cGGCcuucCGCGGAGGCGcCCugCUGg -3'
miRNA:   3'- uaCUGucuuGCGUCUCCGC-GGugGGC- -5'
5361 3' -58.2 NC_001798.1 + 135270 0.69 0.658284
Target:  5'- -aGGCuGGACGCgcuGGuGGCgGCCGCCCc -3'
miRNA:   3'- uaCUGuCUUGCG---UCuCCG-CGGUGGGc -5'
5361 3' -58.2 NC_001798.1 + 128134 0.68 0.718454
Target:  5'- uUGGCGGaAACGUucGA-GCGCCACCUGc -3'
miRNA:   3'- uACUGUC-UUGCGu-CUcCGCGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 127506 0.68 0.688578
Target:  5'- cGUGcCGGAGgGCAuccGGCGCCACCUu -3'
miRNA:   3'- -UACuGUCUUgCGUcu-CCGCGGUGGGc -5'
5361 3' -58.2 NC_001798.1 + 122110 0.67 0.757226
Target:  5'- -cGGCGGGggGCGCuuugccagccGGGGGgGCC-CCCGg -3'
miRNA:   3'- uaCUGUCU--UGCG----------UCUCCgCGGuGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.