Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 5039 | 0.7 | 0.521138 |
Target: 5'- ---cGACCGgGGuguGCGgGGGGGGGGUCu -3' miRNA: 3'- uuguCUGGCgCC---UGUgCCUCCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 152509 | 0.7 | 0.521138 |
Target: 5'- cGCGcGCCccgGCGGGgGCGGAGGGAGg- -3' miRNA: 3'- uUGUcUGG---CGCCUgUGCCUCCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 49397 | 0.7 | 0.530836 |
Target: 5'- cGCGGugaGCUGCGGGCGCGGGaGGAGa- -3' miRNA: 3'- uUGUC---UGGCGCCUGUGCCUcCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 153498 | 0.7 | 0.540599 |
Target: 5'- aAGCAcACCuGCGGGCGgGGAgacacGGGGGUCg -3' miRNA: 3'- -UUGUcUGG-CGCCUGUgCCU-----CCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 6399 | 0.7 | 0.560298 |
Target: 5'- cGGgGGGCCGgGGGgACGGGGGGAc-- -3' miRNA: 3'- -UUgUCUGGCgCCUgUGCCUCCCUcag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 26362 | 0.7 | 0.560298 |
Target: 5'- cGGCGGAgcugCGCGGGcCGCGGcGGGAGUUc -3' miRNA: 3'- -UUGUCUg---GCGCCU-GUGCCuCCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 100986 | 0.7 | 0.570222 |
Target: 5'- --gGGGgCGUGGGCGgGGAGGGGGa- -3' miRNA: 3'- uugUCUgGCGCCUGUgCCUCCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 125654 | 0.69 | 0.590193 |
Target: 5'- cGCGGGCgagGCGGGgGCGGcugaggucaGGGGGGUCg -3' miRNA: 3'- uUGUCUGg--CGCCUgUGCC---------UCCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 16174 | 0.69 | 0.610282 |
Target: 5'- gGGCGGcCCGCGGGgAcCGGGGGGAc-- -3' miRNA: 3'- -UUGUCuGGCGCCUgU-GCCUCCCUcag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 30173 | 0.69 | 0.610282 |
Target: 5'- gGAgGGACacgGgGGACACGGcgcGGGGGUCc -3' miRNA: 3'- -UUgUCUGg--CgCCUGUGCCu--CCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 2998 | 0.69 | 0.620354 |
Target: 5'- cGCGGGCCcCGGGCGCGGGGGcgcggcGGGcCg -3' miRNA: 3'- uUGUCUGGcGCCUGUGCCUCC------CUCaG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 54384 | 0.69 | 0.620354 |
Target: 5'- cGGgGGGCCGCGG-CGCGGucggcGGGAGc- -3' miRNA: 3'- -UUgUCUGGCGCCuGUGCCu----CCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 132969 | 0.68 | 0.650591 |
Target: 5'- -cCAGGCCGCcGAgACGGAGGaGGUg -3' miRNA: 3'- uuGUCUGGCGcCUgUGCCUCCcUCAg -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 4069 | 0.68 | 0.650591 |
Target: 5'- aGGCGGcCCGCGGuCGCcGcGGGGGUCc -3' miRNA: 3'- -UUGUCuGGCGCCuGUGcCuCCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 122064 | 0.68 | 0.650591 |
Target: 5'- --uGGGCgCGuCGGACGCGGAGGcGGUg -3' miRNA: 3'- uugUCUG-GC-GCCUGUGCCUCCcUCAg -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 43665 | 0.68 | 0.660652 |
Target: 5'- uGCuGGCCGCgGGGCugGGGucguGGGuGGUCa -3' miRNA: 3'- uUGuCUGGCG-CCUGugCCU----CCC-UCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 96976 | 0.68 | 0.660652 |
Target: 5'- cGCGGACCGCGGcGgGCGGcGGGGc-- -3' miRNA: 3'- uUGUCUGGCGCC-UgUGCCuCCCUcag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 27268 | 0.68 | 0.670691 |
Target: 5'- cGCAGccCCGUGGcGCGCGGGgGGGAGg- -3' miRNA: 3'- uUGUCu-GGCGCC-UGUGCCU-CCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 113126 | 0.68 | 0.670691 |
Target: 5'- aGACgAGGCCGCGuGugGCGGGGaGGAc-- -3' miRNA: 3'- -UUG-UCUGGCGC-CugUGCCUC-CCUcag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 29917 | 0.68 | 0.680699 |
Target: 5'- cGCGGGCgGUGGGCuCGGGGGcGGGa- -3' miRNA: 3'- uUGUCUGgCGCCUGuGCCUCC-CUCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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