miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5382 3' -58.9 NC_001798.1 + 153991 0.66 0.75582
Target:  5'- ---cGACCGCGGuucccgagucguacGCAgGGAccauuuGGGAGUCu -3'
miRNA:   3'- uuguCUGGCGCC--------------UGUgCCU------CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 153667 0.67 0.710457
Target:  5'- cGCGGcgcguCCGCGGGCGgGGAcgcGGGGGcCg -3'
miRNA:   3'- uUGUCu----GGCGCCUGUgCCU---CCCUCaG- -5'
5382 3' -58.9 NC_001798.1 + 153498 0.7 0.540599
Target:  5'- aAGCAcACCuGCGGGCGgGGAgacacGGGGGUCg -3'
miRNA:   3'- -UUGUcUGG-CGCCUGUgCCU-----CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 152509 0.7 0.521138
Target:  5'- cGCGcGCCccgGCGGGgGCGGAGGGAGg- -3'
miRNA:   3'- uUGUcUGG---CGCCUgUGCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 151279 0.66 0.786326
Target:  5'- cGCAcGGCCGCcucGGccuccACGCGGGuccGGGGGUCg -3'
miRNA:   3'- uUGU-CUGGCG---CC-----UGUGCCU---CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 150857 0.66 0.767992
Target:  5'- -uCGGgucGCgGCGGGCugGGAGGuuccgcGGGUCg -3'
miRNA:   3'- uuGUC---UGgCGCCUGugCCUCC------CUCAG- -5'
5382 3' -58.9 NC_001798.1 + 150631 0.67 0.739634
Target:  5'- --uGGGCCGCGcGGggcugucuCGCGGGGGGcGUCc -3'
miRNA:   3'- uugUCUGGCGC-CU--------GUGCCUCCCuCAG- -5'
5382 3' -58.9 NC_001798.1 + 150576 0.67 0.729988
Target:  5'- cGCGGGgcggCGCGGAgacgGCGGGGGaGAGUCg -3'
miRNA:   3'- uUGUCUg---GCGCCUg---UGCCUCC-CUCAG- -5'
5382 3' -58.9 NC_001798.1 + 149985 0.66 0.786326
Target:  5'- cGCGGcgcCCGCGGACGCcGGGGcGAG-Cg -3'
miRNA:   3'- uUGUCu--GGCGCCUGUGcCUCC-CUCaG- -5'
5382 3' -58.9 NC_001798.1 + 149742 0.67 0.74919
Target:  5'- cGCAGcAgCGCGGGgGCcGAGGGAGg- -3'
miRNA:   3'- uUGUC-UgGCGCCUgUGcCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 145810 0.72 0.43751
Target:  5'- cGGCAGAaaCGCGGGCGCGGcGGcGGUCg -3'
miRNA:   3'- -UUGUCUg-GCGCCUGUGCCuCCcUCAG- -5'
5382 3' -58.9 NC_001798.1 + 139934 0.67 0.700591
Target:  5'- aAGCGGGCCcugGCGGcGCACGGGGGcGAa-- -3'
miRNA:   3'- -UUGUCUGG---CGCC-UGUGCCUCC-CUcag -5'
5382 3' -58.9 NC_001798.1 + 135794 0.67 0.74919
Target:  5'- gAGgAGGCCGUGuGCGCGGcccGGGGcGUCa -3'
miRNA:   3'- -UUgUCUGGCGCcUGUGCC---UCCCuCAG- -5'
5382 3' -58.9 NC_001798.1 + 132969 0.68 0.650591
Target:  5'- -cCAGGCCGCcGAgACGGAGGaGGUg -3'
miRNA:   3'- uuGUCUGGCGcCUgUGCCUCCcUCAg -5'
5382 3' -58.9 NC_001798.1 + 130698 0.67 0.700591
Target:  5'- cAACgAGACCGCGGcggcggccguGCACaGGAGGGuGcCc -3'
miRNA:   3'- -UUG-UCUGGCGCC----------UGUG-CCUCCCuCaG- -5'
5382 3' -58.9 NC_001798.1 + 129290 0.76 0.251733
Target:  5'- cGGCAGGCaccgCGCGGGCGCGGAGGaGGG-Cg -3'
miRNA:   3'- -UUGUCUG----GCGCCUGUGCCUCC-CUCaG- -5'
5382 3' -58.9 NC_001798.1 + 125654 0.69 0.590193
Target:  5'- cGCGGGCgagGCGGGgGCGGcugaggucaGGGGGGUCg -3'
miRNA:   3'- uUGUCUGg--CGCCUgUGCC---------UCCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 122064 0.68 0.650591
Target:  5'- --uGGGCgCGuCGGACGCGGAGGcGGUg -3'
miRNA:   3'- uugUCUG-GC-GCCUGUGCCUCCcUCAg -5'
5382 3' -58.9 NC_001798.1 + 121392 0.67 0.739634
Target:  5'- uACGuGCCgGCGGAUGCGGuGGGGG-Cg -3'
miRNA:   3'- uUGUcUGG-CGCCUGUGCCuCCCUCaG- -5'
5382 3' -58.9 NC_001798.1 + 113126 0.68 0.670691
Target:  5'- aGACgAGGCCGCGuGugGCGGGGaGGAc-- -3'
miRNA:   3'- -UUG-UCUGGCGC-CugUGCCUC-CCUcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.