miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5393 5' -56.6 NC_001798.1 + 154488 0.66 0.886564
Target:  5'- cCGCGGGCGCCGCCCCUccccccgcgcgccGcGGGGc-- -3'
miRNA:   3'- cGUGUUUGUGGUGGGGA-------------CaCCCCcuc -5'
5393 5' -56.6 NC_001798.1 + 153047 0.73 0.522673
Target:  5'- cGCGCGguuggccGGCGCCGcCCCCUGgggcGGGcGGAGc -3'
miRNA:   3'- -CGUGU-------UUGUGGU-GGGGACa---CCC-CCUC- -5'
5393 5' -56.6 NC_001798.1 + 150173 0.71 0.634149
Target:  5'- -gGCGGGcCGCCGCCCCcuccgcggcGUGGGGGGc -3'
miRNA:   3'- cgUGUUU-GUGGUGGGGa--------CACCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 150053 0.69 0.744207
Target:  5'- gGCGC-GGCGCCGCCCUcuUGgcccccacccccUGGGGGGc -3'
miRNA:   3'- -CGUGuUUGUGGUGGGG--AC------------ACCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 138918 0.66 0.880324
Target:  5'- gGCGCAAAgcagucUACCACCCC-GUGGGc--- -3'
miRNA:   3'- -CGUGUUU------GUGGUGGGGaCACCCccuc -5'
5393 5' -56.6 NC_001798.1 + 137130 0.68 0.791067
Target:  5'- -aACGAACcgcaACCGCCCCc-UGGGGGuGa -3'
miRNA:   3'- cgUGUUUG----UGGUGGGGacACCCCCuC- -5'
5393 5' -56.6 NC_001798.1 + 126705 0.68 0.800049
Target:  5'- aGCuCGu-CGCgACCCUgcucGUGGGGGAGu -3'
miRNA:   3'- -CGuGUuuGUGgUGGGGa---CACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 126101 0.69 0.763305
Target:  5'- cGCgGCGAACGCgu-CUCUGUGGGGGGa -3'
miRNA:   3'- -CG-UGUUUGUGgugGGGACACCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 124126 0.67 0.858267
Target:  5'- cGCGCuGugGCgCGCCCCcgccGUGGcGGAGg -3'
miRNA:   3'- -CGUGuUugUG-GUGGGGa---CACCcCCUC- -5'
5393 5' -56.6 NC_001798.1 + 121285 0.71 0.634149
Target:  5'- uGCGCG---GCCGCCCCgacgGUGGGGcGGc -3'
miRNA:   3'- -CGUGUuugUGGUGGGGa---CACCCC-CUc -5'
5393 5' -56.6 NC_001798.1 + 119732 0.66 0.863582
Target:  5'- cGCACcccaACCACCCaaccaacggacaaaCUGUuguaGGGGGGGa -3'
miRNA:   3'- -CGUGuuugUGGUGGG--------------GACA----CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 119494 0.67 0.82606
Target:  5'- cGguUAucCGCUACCCCUGaGGcGGGGGc -3'
miRNA:   3'- -CguGUuuGUGGUGGGGACaCC-CCCUC- -5'
5393 5' -56.6 NC_001798.1 + 116245 0.68 0.781943
Target:  5'- gGCGCu-GCuGCCGCCCCUcGUGuGGGAc -3'
miRNA:   3'- -CGUGuuUG-UGGUGGGGA-CACcCCCUc -5'
5393 5' -56.6 NC_001798.1 + 114467 0.68 0.800049
Target:  5'- cCACcGAgGCCAUugCCCUGcucacGGGGGAGg -3'
miRNA:   3'- cGUGuUUgUGGUG--GGGACa----CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 113634 0.67 0.82606
Target:  5'- uGCGCGgccGGCGCCGCCa-UGUGGGuGGcGg -3'
miRNA:   3'- -CGUGU---UUGUGGUGGggACACCC-CCuC- -5'
5393 5' -56.6 NC_001798.1 + 112923 0.75 0.430103
Target:  5'- cCGCGGAUACUACCCggGUGGGGGu- -3'
miRNA:   3'- cGUGUUUGUGGUGGGgaCACCCCCuc -5'
5393 5' -56.6 NC_001798.1 + 107734 0.68 0.791067
Target:  5'- gGCGCGcACGUUugCCCgcgagGUGGGGGGa -3'
miRNA:   3'- -CGUGUuUGUGGugGGGa----CACCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 107041 0.68 0.800049
Target:  5'- gGCgACGGACGCCguuuugGCUCCUcauaucggGGGGGAGg -3'
miRNA:   3'- -CG-UGUUUGUGG------UGGGGAca------CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 105980 0.76 0.378899
Target:  5'- cCGCAgcGACGCCuacgACCCCUGgggaGGGGGGGu -3'
miRNA:   3'- cGUGU--UUGUGG----UGGGGACa---CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 105655 0.68 0.817554
Target:  5'- gGCGCccAACACCACguuCUUUGaGGGGGGGa -3'
miRNA:   3'- -CGUGu-UUGUGGUG---GGGACaCCCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.