miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5398 3' -54.2 NC_001798.1 + 154179 0.67 0.933088
Target:  5'- cCCggaGCCGGAGCGCgucGGGgcggGAGAg -3'
miRNA:   3'- -GGacgCGGCCUCGCG---CCCaua-UUUUg -5'
5398 3' -54.2 NC_001798.1 + 154094 0.73 0.634569
Target:  5'- --aGCGCCGGGGCGCGGccggcgccgGGGACc -3'
miRNA:   3'- ggaCGCGGCCUCGCGCCcaua-----UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 154046 0.8 0.301113
Target:  5'- --cGCGCCGGGGCGCGGcacGgcUGGAGCg -3'
miRNA:   3'- ggaCGCGGCCUCGCGCC---CauAUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 151573 0.7 0.795337
Target:  5'- cCCUGCGCguCGGcgGGCGUGGGgcUGcccuGGCg -3'
miRNA:   3'- -GGACGCG--GCC--UCGCGCCCauAUu---UUG- -5'
5398 3' -54.2 NC_001798.1 + 150907 0.74 0.615984
Target:  5'- cCCcGCGCCGGGGCGCucuucGGGgggcGGGCg -3'
miRNA:   3'- -GGaCGCGGCCUCGCG-----CCCauauUUUG- -5'
5398 3' -54.2 NC_001798.1 + 150423 0.66 0.95926
Target:  5'- --gGCGgCGGcGGCGCGGGgc--GGACu -3'
miRNA:   3'- ggaCGCgGCC-UCGCGCCCauauUUUG- -5'
5398 3' -54.2 NC_001798.1 + 150340 0.7 0.795337
Target:  5'- --cGCGaCCGGGGCGCGcGGUGc----- -3'
miRNA:   3'- ggaCGC-GGCCUCGCGC-CCAUauuuug -5'
5398 3' -54.2 NC_001798.1 + 149659 0.7 0.813255
Target:  5'- gCCggGCGCCGGGuCGCGGGccccGGGCu -3'
miRNA:   3'- -GGa-CGCGGCCUcGCGCCCauauUUUG- -5'
5398 3' -54.2 NC_001798.1 + 148421 0.79 0.353426
Target:  5'- --gGCGCCGGGGCGgGGGUGggcacGGGCg -3'
miRNA:   3'- ggaCGCGGCCUCGCgCCCAUau---UUUG- -5'
5398 3' -54.2 NC_001798.1 + 147222 0.66 0.95148
Target:  5'- gCCccCGgCGGAGCGCGGGggccccGGGGCc -3'
miRNA:   3'- -GGacGCgGCCUCGCGCCCaua---UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 146512 0.66 0.95926
Target:  5'- cCCcGCGCCGGc-CGCGGcGgagAGAACc -3'
miRNA:   3'- -GGaCGCGGCCucGCGCC-CauaUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 146277 0.66 0.962808
Target:  5'- aCC-GCaGCCGGAGaggccgaGCGGGgaguGGGCg -3'
miRNA:   3'- -GGaCG-CGGCCUCg------CGCCCauauUUUG- -5'
5398 3' -54.2 NC_001798.1 + 143133 0.7 0.811493
Target:  5'- gCUUGCGCUGGcGCGCGGccguccccgAAAACg -3'
miRNA:   3'- -GGACGCGGCCuCGCGCCcaua-----UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 140196 0.67 0.922441
Target:  5'- gCCUGCgGCCGGugcugguguGCGUGGGg------- -3'
miRNA:   3'- -GGACG-CGGCCu--------CGCGCCCauauuuug -5'
5398 3' -54.2 NC_001798.1 + 135318 0.69 0.838857
Target:  5'- gCC-GUGCUGGAGCGCcuGGUGccGGACg -3'
miRNA:   3'- -GGaCGCGGCCUCGCGc-CCAUauUUUG- -5'
5398 3' -54.2 NC_001798.1 + 132138 0.72 0.708347
Target:  5'- cCCUGCGCCgccgGGGGCcgGCGGGc--GGGGCg -3'
miRNA:   3'- -GGACGCGG----CCUCG--CGCCCauaUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 128439 0.66 0.95926
Target:  5'- gCUGCGgUGGGGCGCgcaGGGUccgu-GCu -3'
miRNA:   3'- gGACGCgGCCUCGCG---CCCAuauuuUG- -5'
5398 3' -54.2 NC_001798.1 + 122429 0.66 0.962808
Target:  5'- gCCUGUGCCGccGAGCGCGucGUGc----- -3'
miRNA:   3'- -GGACGCGGC--CUCGCGCc-CAUauuuug -5'
5398 3' -54.2 NC_001798.1 + 122221 0.68 0.910822
Target:  5'- -gUG-GCUGGAcCGCGGGUGgGAAGCu -3'
miRNA:   3'- ggACgCGGCCUcGCGCCCAUaUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 121547 0.68 0.891595
Target:  5'- gCUGCGCCuG-GCGUGGGgcccguGGGCg -3'
miRNA:   3'- gGACGCGGcCuCGCGCCCauau--UUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.