miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5399 3' -55.5 NC_001798.1 + 153231 0.66 0.909746
Target:  5'- ---cCCGGGCCCgCggcgGCGGagGACCcgCGCg -3'
miRNA:   3'- cgaaGGCCCGGG-G----UGCU--UUGGuaGUG- -5'
5399 3' -55.5 NC_001798.1 + 153170 0.67 0.869314
Target:  5'- aGCUcCgGGGCUCCGCcggccGAGGCCGcccUCGCc -3'
miRNA:   3'- -CGAaGgCCCGGGGUG-----CUUUGGU---AGUG- -5'
5399 3' -55.5 NC_001798.1 + 153092 0.68 0.829733
Target:  5'- gGCggcgCCGGGCCCuCGCGGAuaUAUaCGCg -3'
miRNA:   3'- -CGaa--GGCCCGGG-GUGCUUugGUA-GUG- -5'
5399 3' -55.5 NC_001798.1 + 153022 0.73 0.586189
Target:  5'- gGCggagUCCGGGCCCgCGCGGcggcgcgcgguuGGCCggCGCc -3'
miRNA:   3'- -CGa---AGGCCCGGG-GUGCU------------UUGGuaGUG- -5'
5399 3' -55.5 NC_001798.1 + 152381 0.69 0.794791
Target:  5'- ---gCCGGGCCgCCGCu---CCGUCGCu -3'
miRNA:   3'- cgaaGGCCCGG-GGUGcuuuGGUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 150625 0.74 0.50643
Target:  5'- gGCUcCUGGGCCgCGCGggGCUGucUCGCg -3'
miRNA:   3'- -CGAaGGCCCGGgGUGCuuUGGU--AGUG- -5'
5399 3' -55.5 NC_001798.1 + 150562 0.72 0.616818
Target:  5'- aGCggcCCGGGgCCCGCGggGCgG-CGCg -3'
miRNA:   3'- -CGaa-GGCCCgGGGUGCuuUGgUaGUG- -5'
5399 3' -55.5 NC_001798.1 + 149665 0.73 0.565923
Target:  5'- cGCcgggUCgCGGGCCCCGggcuCGggGCCGcccUCGCg -3'
miRNA:   3'- -CGa---AG-GCCCGGGGU----GCuuUGGU---AGUG- -5'
5399 3' -55.5 NC_001798.1 + 147217 0.66 0.915674
Target:  5'- ---cCCGGGCCCCcgGCGGAGCgCGg--- -3'
miRNA:   3'- cgaaGGCCCGGGG--UGCUUUG-GUagug -5'
5399 3' -55.5 NC_001798.1 + 146652 0.66 0.921364
Target:  5'- gGCggCC-GGCCCCACGcccuuCCAUUAa -3'
miRNA:   3'- -CGaaGGcCCGGGGUGCuuu--GGUAGUg -5'
5399 3' -55.5 NC_001798.1 + 140105 0.69 0.821248
Target:  5'- ---gCCGGGCUCCugGGGcggcACCuacUCACg -3'
miRNA:   3'- cgaaGGCCCGGGGugCUU----UGGu--AGUG- -5'
5399 3' -55.5 NC_001798.1 + 138741 0.68 0.838039
Target:  5'- cGC-UCCGcGGCCCCgGCGA--CCGUgGCc -3'
miRNA:   3'- -CGaAGGC-CCGGGG-UGCUuuGGUAgUG- -5'
5399 3' -55.5 NC_001798.1 + 135530 0.68 0.8618
Target:  5'- cGCccgCCGGGCCCU-CGAGGcguCCGUgCGCg -3'
miRNA:   3'- -CGaa-GGCCCGGGGuGCUUU---GGUA-GUG- -5'
5399 3' -55.5 NC_001798.1 + 134888 0.69 0.803769
Target:  5'- aUUUCCGGGCuggCCCACGuuuACCGUg-- -3'
miRNA:   3'- cGAAGGCCCG---GGGUGCuu-UGGUAgug -5'
5399 3' -55.5 NC_001798.1 + 134655 0.68 0.8618
Target:  5'- ---cCUGcGGCCCCGCGGAcACCcgcagcggGUCACg -3'
miRNA:   3'- cgaaGGC-CCGGGGUGCUU-UGG--------UAGUG- -5'
5399 3' -55.5 NC_001798.1 + 134152 0.76 0.405329
Target:  5'- --gUCUcGGCCCC-CGggGCCGUCGCg -3'
miRNA:   3'- cgaAGGcCCGGGGuGCuuUGGUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 129688 0.67 0.881594
Target:  5'- gGCgcCgGGGCCCCAguaccggcgcgcauCGGAccccCCAUCGCg -3'
miRNA:   3'- -CGaaGgCCCGGGGU--------------GCUUu---GGUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 129350 0.7 0.738148
Target:  5'- aGCgcccgCCGGGCCUgGCGggGCCccCGg -3'
miRNA:   3'- -CGaa---GGCCCGGGgUGCuuUGGuaGUg -5'
5399 3' -55.5 NC_001798.1 + 128958 0.72 0.647551
Target:  5'- cGCgUUCCGGGCCCgGagGAGGCgcuCGUCACc -3'
miRNA:   3'- -CG-AAGGCCCGGGgUg-CUUUG---GUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 128396 0.69 0.803769
Target:  5'- aGC-UCUGGGCCCUgcuucgGCGggGCC-UgACg -3'
miRNA:   3'- -CGaAGGCCCGGGG------UGCuuUGGuAgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.