miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5405 5' -54 NC_001798.1 + 145805 0.66 0.966136
Target:  5'- gCGGGcgGCAGAaacGCGGGcgcggcgGCGGUCGg -3'
miRNA:   3'- gGUCC--UGUUUgaaCGCCCa------CGCCAGU- -5'
5405 5' -54 NC_001798.1 + 26941 0.66 0.966136
Target:  5'- gCGGGGuCGGGCggGCGGGggucggGCGGgCGg -3'
miRNA:   3'- gGUCCU-GUUUGaaCGCCCa-----CGCCaGU- -5'
5405 5' -54 NC_001798.1 + 36841 0.66 0.966136
Target:  5'- -gGGGACcGGCUgugugGUGGGUGgGGgaggCAc -3'
miRNA:   3'- ggUCCUGuUUGAa----CGCCCACgCCa---GU- -5'
5405 5' -54 NC_001798.1 + 27338 0.66 0.966136
Target:  5'- gCGGGgaaccguguGCGGGCggGCGGGUGCuuGGUgCAa -3'
miRNA:   3'- gGUCC---------UGUUUGaaCGCCCACG--CCA-GU- -5'
5405 5' -54 NC_001798.1 + 146419 0.66 0.966136
Target:  5'- aCGGGGCGAGCcggGCaGaGUGCGGa-- -3'
miRNA:   3'- gGUCCUGUUUGaa-CGcC-CACGCCagu -5'
5405 5' -54 NC_001798.1 + 122825 0.66 0.962808
Target:  5'- gCCAGGGCGGuCggggGCGGcGgcgGCGGcUCGu -3'
miRNA:   3'- -GGUCCUGUUuGaa--CGCC-Ca--CGCC-AGU- -5'
5405 5' -54 NC_001798.1 + 74534 0.66 0.962808
Target:  5'- cUCGGGGCGcuCuUUGUcGGUGUGGUCc -3'
miRNA:   3'- -GGUCCUGUuuG-AACGcCCACGCCAGu -5'
5405 5' -54 NC_001798.1 + 96964 0.66 0.962463
Target:  5'- aCCAGGcgcuggcGCGGACcgcgGCGGGcgGCGGg-- -3'
miRNA:   3'- -GGUCC-------UGUUUGaa--CGCCCa-CGCCagu -5'
5405 5' -54 NC_001798.1 + 150913 0.66 0.95926
Target:  5'- gCCGGGGCGcuCUU-CGGGggGCGGgCGg -3'
miRNA:   3'- -GGUCCUGUuuGAAcGCCCa-CGCCaGU- -5'
5405 5' -54 NC_001798.1 + 2559 0.66 0.95926
Target:  5'- gCGGGAgGGGCggccGCGGG-GCGGg-- -3'
miRNA:   3'- gGUCCUgUUUGaa--CGCCCaCGCCagu -5'
5405 5' -54 NC_001798.1 + 27700 0.66 0.95926
Target:  5'- cCCGGGGgAAAagagGCGGG-GCGGg-- -3'
miRNA:   3'- -GGUCCUgUUUgaa-CGCCCaCGCCagu -5'
5405 5' -54 NC_001798.1 + 12337 0.66 0.957778
Target:  5'- aCCGGGAuCGGACgggucgagguggcUGUGGGcGCGGUg- -3'
miRNA:   3'- -GGUCCU-GUUUGa------------ACGCCCaCGCCAgu -5'
5405 5' -54 NC_001798.1 + 20619 0.66 0.955486
Target:  5'- uUCGGGGuCGcuugGAUUUGCGGGgggGUGuGUCAa -3'
miRNA:   3'- -GGUCCU-GU----UUGAACGCCCa--CGC-CAGU- -5'
5405 5' -54 NC_001798.1 + 153811 0.66 0.955486
Target:  5'- -gGGGGCAGGCggcggcaggcGCGGcGUGCGGg-- -3'
miRNA:   3'- ggUCCUGUUUGaa--------CGCC-CACGCCagu -5'
5405 5' -54 NC_001798.1 + 150094 0.67 0.938047
Target:  5'- -aGGGGCGAGC--GCGGGgcgGCGGa-- -3'
miRNA:   3'- ggUCCUGUUUGaaCGCCCa--CGCCagu -5'
5405 5' -54 NC_001798.1 + 148384 0.67 0.938047
Target:  5'- -aGGGGCGGGCgugGCGGGcaggugUGCGGgCGg -3'
miRNA:   3'- ggUCCUGUUUGaa-CGCCC------ACGCCaGU- -5'
5405 5' -54 NC_001798.1 + 148277 0.67 0.938047
Target:  5'- -aGGGGCGGGCgugGCGGGcaggugUGCGGgCGg -3'
miRNA:   3'- ggUCCUGUUUGaa-CGCCC------ACGCCaGU- -5'
5405 5' -54 NC_001798.1 + 2950 0.67 0.938047
Target:  5'- gCCAGG-CGcGCagGCGGG-GCGcGUCGg -3'
miRNA:   3'- -GGUCCuGUuUGaaCGCCCaCGC-CAGU- -5'
5405 5' -54 NC_001798.1 + 100740 0.67 0.927887
Target:  5'- -gGGGAUgggGGACUUGgGGcGcGCGGUCGg -3'
miRNA:   3'- ggUCCUG---UUUGAACgCC-CaCGCCAGU- -5'
5405 5' -54 NC_001798.1 + 36403 0.67 0.922441
Target:  5'- gCCGGGGCcccccuGCcggGCGGG-GCGGUgGg -3'
miRNA:   3'- -GGUCCUGuu----UGaa-CGCCCaCGCCAgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.