miRNA display CGI


Results 41 - 60 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 36497 0.71 0.486661
Target:  5'- gGCGCgaCGCGGGCGgccgggcggggGCGCGCGGCg-- -3'
miRNA:   3'- gCGCGg-GCGCUUGU-----------UGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 74407 0.71 0.486661
Target:  5'- gGCGCCgGCGGACcuGACcgcCGCGGCcCUg -3'
miRNA:   3'- gCGCGGgCGCUUG--UUGu--GCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 2256 0.71 0.495068
Target:  5'- gGCGCgCCGcCGGggggcggggcggcGCAGCGCGCGGC-Ca -3'
miRNA:   3'- gCGCG-GGC-GCU-------------UGUUGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 86722 0.71 0.495068
Target:  5'- cCGCGCuggccacauuuguCCGCGAGgcCGGCGCGCuGCUCa -3'
miRNA:   3'- -GCGCG-------------GGCGCUU--GUUGUGCGcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 42747 0.71 0.496006
Target:  5'- cCGuCGCCCGCacagacGGGCGGCGCGCGGggCc -3'
miRNA:   3'- -GC-GCGGGCG------CUUGUUGUGCGCCgaGa -5'
5406 3' -58.9 NC_001798.1 + 47013 0.71 0.496006
Target:  5'- gCGUGCCCGgggagccgcCGAACGcggcaggcGCACGCGGCg-- -3'
miRNA:   3'- -GCGCGGGC---------GCUUGU--------UGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 143129 0.71 0.505431
Target:  5'- cCGCGCuuGCGcu-GGCGCGCGGC-Cg -3'
miRNA:   3'- -GCGCGggCGCuugUUGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 34940 0.71 0.514933
Target:  5'- uCGCGCCuuuCGCGA---ACGCGCGGCg-- -3'
miRNA:   3'- -GCGCGG---GCGCUuguUGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 5377 0.71 0.514933
Target:  5'- gCGCGUCCGCGucCGugGCGgCGGCcCg -3'
miRNA:   3'- -GCGCGGGCGCuuGUugUGC-GCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 121561 0.71 0.524505
Target:  5'- gGgGCCCGUGGGCGACcugugccCGCGuGCUCc -3'
miRNA:   3'- gCgCGGGCGCUUGUUGu------GCGC-CGAGa -5'
5406 3' -58.9 NC_001798.1 + 117083 0.71 0.534145
Target:  5'- -aCGCCCGCGAGa---GCGCGGCg-- -3'
miRNA:   3'- gcGCGGGCGCUUguugUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 126744 0.71 0.534145
Target:  5'- gCGCGgCCGCacccACGACAucCGCGGCUUUa -3'
miRNA:   3'- -GCGCgGGCGcu--UGUUGU--GCGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 138738 0.7 0.543847
Target:  5'- gCGCGCuCCGCGGccccgGCGAC-CGUGGCcagCUg -3'
miRNA:   3'- -GCGCG-GGCGCU-----UGUUGuGCGCCGa--GA- -5'
5406 3' -58.9 NC_001798.1 + 25495 0.7 0.543847
Target:  5'- uCGgGCCCGCu-GCGcCGCGCGGCg-- -3'
miRNA:   3'- -GCgCGGGCGcuUGUuGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 64899 0.7 0.543847
Target:  5'- aCGCGcCCCGCGAacgcACAGCGCGUuacuGGUcuUCa -3'
miRNA:   3'- -GCGC-GGGCGCU----UGUUGUGCG----CCG--AGa -5'
5406 3' -58.9 NC_001798.1 + 100061 0.7 0.543847
Target:  5'- aGCGCCaCGUGAAUGACAUGCuggGGCg-- -3'
miRNA:   3'- gCGCGG-GCGCUUGUUGUGCG---CCGaga -5'
5406 3' -58.9 NC_001798.1 + 222 0.7 0.553606
Target:  5'- cCGCGCCCGCccc---CGCGCGGCa-- -3'
miRNA:   3'- -GCGCGGGCGcuuguuGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 24816 0.7 0.553606
Target:  5'- uGCGCCUGCGcgggGACcuGCGCGUGGC-Cg -3'
miRNA:   3'- gCGCGGGCGC----UUGu-UGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 134446 0.7 0.553606
Target:  5'- gCGCGCgUCGcCGAGCAccccgGCGCGCGGUUg- -3'
miRNA:   3'- -GCGCG-GGC-GCUUGU-----UGUGCGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 154560 0.7 0.553606
Target:  5'- cCGCGCCCGCccc---CGCGCGGCa-- -3'
miRNA:   3'- -GCGCGGGCGcuuguuGUGCGCCGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.