miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5415 5' -60.5 NC_001798.1 + 153228 0.86 0.045254
Target:  5'- -cGGCCCGGGCCCGCGGcGGcGGAGGAc -3'
miRNA:   3'- caCCGGGUCUGGGCGCU-CCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 28751 0.78 0.159939
Target:  5'- -gGGCCCacgaagacggcGGACCCGCgGAGGaGGAGGAg -3'
miRNA:   3'- caCCGGG-----------UCUGGGCG-CUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 107732 0.76 0.214242
Target:  5'- cUGGCgCGcacguuuGCCCGCGAGGUGGGGGGa -3'
miRNA:   3'- cACCGgGUc------UGGGCGCUCCAUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 150564 0.76 0.219943
Target:  5'- -cGGCCCgGGGCCCGCGGGGcggcgcggagacggcGGGGGAg -3'
miRNA:   3'- caCCGGG-UCUGGGCGCUCCa--------------UCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 79279 0.73 0.346549
Target:  5'- -cGGCCgCGGAccuggcCCCGUGGgcGGUGGAGGAg -3'
miRNA:   3'- caCCGG-GUCU------GGGCGCU--CCAUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 75297 0.72 0.377557
Target:  5'- --cGCCCuGGCCCGCGAGGUGGc--- -3'
miRNA:   3'- cacCGGGuCUGGGCGCUCCAUCuccu -5'
5415 5' -60.5 NC_001798.1 + 132965 0.71 0.410379
Target:  5'- -cGGCCCAGGCCgC-CGAGacGGAGGAg -3'
miRNA:   3'- caCCGGGUCUGG-GcGCUCcaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 61718 0.71 0.418857
Target:  5'- -cGGCCCAGugCCGCacGGacGAGGAg -3'
miRNA:   3'- caCCGGGUCugGGCGcuCCauCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 34838 0.71 0.436128
Target:  5'- -gGGCCCGGGCcggaCCGCcGGGcGGGGGAc -3'
miRNA:   3'- caCCGGGUCUG----GGCGcUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 66830 0.7 0.453802
Target:  5'- -cGGCCCGGugCCGgcgcccaggcCGGGGUuuccGGGGAg -3'
miRNA:   3'- caCCGGGUCugGGC----------GCUCCAu---CUCCU- -5'
5415 5' -60.5 NC_001798.1 + 16158 0.7 0.462784
Target:  5'- -gGGCaCCGagcgccacgggcGGCCCGCGGGGaccgGGGGGAc -3'
miRNA:   3'- caCCG-GGU------------CUGGGCGCUCCa---UCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 97548 0.7 0.462784
Target:  5'- cGUGGCgCGGggacGCCCGCGAGc--GAGGAc -3'
miRNA:   3'- -CACCGgGUC----UGGGCGCUCcauCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 147214 0.7 0.481021
Target:  5'- -cGGCCCGGGCCCccggcggagcGCGGGGgccccGGGGc -3'
miRNA:   3'- caCCGGGUCUGGG----------CGCUCCau---CUCCu -5'
5415 5' -60.5 NC_001798.1 + 147491 0.69 0.50901
Target:  5'- -gGGaCCCAGGCuCCGgGGGG-GGGGGGc -3'
miRNA:   3'- caCC-GGGUCUG-GGCgCUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 95563 0.69 0.50901
Target:  5'- -cGGCCCuggagguGGCCCaCGAGGcGGAGGc -3'
miRNA:   3'- caCCGGGu------CUGGGcGCUCCaUCUCCu -5'
5415 5' -60.5 NC_001798.1 + 76887 0.69 0.50901
Target:  5'- -gGGCCUcccuGCCCGCGGGGUGGAc-- -3'
miRNA:   3'- caCCGGGuc--UGGGCGCUCCAUCUccu -5'
5415 5' -60.5 NC_001798.1 + 73242 0.69 0.50901
Target:  5'- -cGGCCCggGGGCCCcCGGGGaccUGGAGGc -3'
miRNA:   3'- caCCGGG--UCUGGGcGCUCC---AUCUCCu -5'
5415 5' -60.5 NC_001798.1 + 15439 0.69 0.518493
Target:  5'- -gGGcCCCGGAgUCGUGGGGcGGGGGGu -3'
miRNA:   3'- caCC-GGGUCUgGGCGCUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 117072 0.69 0.528045
Target:  5'- cGUGGUgCAGcacGCCCGCGAgagcgcGGcGGGGGAg -3'
miRNA:   3'- -CACCGgGUC---UGGGCGCU------CCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 2551 0.69 0.528045
Target:  5'- -cGGCCCccgcgggagGGGCggCCGCGGGGcGGGGGGc -3'
miRNA:   3'- caCCGGG---------UCUG--GGCGCUCCaUCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.