Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5415 | 5' | -60.5 | NC_001798.1 | + | 34127 | 0.66 | 0.735171 |
Target: 5'- -gGGCCC-GACCCGCGccugcccccccGGGaacgacgacggggggGGGGGAa -3' miRNA: 3'- caCCGGGuCUGGGCGC-----------UCCa--------------UCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 147214 | 0.7 | 0.481021 |
Target: 5'- -cGGCCCGGGCCCccggcggagcGCGGGGgccccGGGGc -3' miRNA: 3'- caCCGGGUCUGGG----------CGCUCCau---CUCCu -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 73242 | 0.69 | 0.50901 |
Target: 5'- -cGGCCCggGGGCCCcCGGGGaccUGGAGGc -3' miRNA: 3'- caCCGGG--UCUGGGcGCUCC---AUCUCCu -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 76887 | 0.69 | 0.50901 |
Target: 5'- -gGGCCUcccuGCCCGCGGGGUGGAc-- -3' miRNA: 3'- caCCGGGuc--UGGGCGCUCCAUCUccu -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 95563 | 0.69 | 0.50901 |
Target: 5'- -cGGCCCuggagguGGCCCaCGAGGcGGAGGc -3' miRNA: 3'- caCCGGGu------CUGGGcGCUCCaUCUCCu -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 147491 | 0.69 | 0.50901 |
Target: 5'- -gGGaCCCAGGCuCCGgGGGG-GGGGGGc -3' miRNA: 3'- caCC-GGGUCUG-GGCgCUCCaUCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 15439 | 0.69 | 0.518493 |
Target: 5'- -gGGcCCCGGAgUCGUGGGGcGGGGGGu -3' miRNA: 3'- caCC-GGGUCUgGGCGCUCCaUCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 117072 | 0.69 | 0.528045 |
Target: 5'- cGUGGUgCAGcacGCCCGCGAgagcgcGGcGGGGGAg -3' miRNA: 3'- -CACCGgGUC---UGGGCGCU------CCaUCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 2551 | 0.69 | 0.528045 |
Target: 5'- -cGGCCCccgcgggagGGGCggCCGCGGGGcGGGGGGc -3' miRNA: 3'- caCCGGG---------UCUG--GGCGCUCCaUCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 16158 | 0.7 | 0.462784 |
Target: 5'- -gGGCaCCGagcgccacgggcGGCCCGCGGGGaccgGGGGGAc -3' miRNA: 3'- caCCG-GGU------------CUGGGCGCUCCa---UCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 97548 | 0.7 | 0.462784 |
Target: 5'- cGUGGCgCGGggacGCCCGCGAGc--GAGGAc -3' miRNA: 3'- -CACCGgGUC----UGGGCGCUCcauCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 66830 | 0.7 | 0.453802 |
Target: 5'- -cGGCCCGGugCCGgcgcccaggcCGGGGUuuccGGGGAg -3' miRNA: 3'- caCCGGGUCugGGC----------GCUCCAu---CUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 28751 | 0.78 | 0.159939 |
Target: 5'- -gGGCCCacgaagacggcGGACCCGCgGAGGaGGAGGAg -3' miRNA: 3'- caCCGGG-----------UCUGGGCG-CUCCaUCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 107732 | 0.76 | 0.214242 |
Target: 5'- cUGGCgCGcacguuuGCCCGCGAGGUGGGGGGa -3' miRNA: 3'- cACCGgGUc------UGGGCGCUCCAUCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 150564 | 0.76 | 0.219943 |
Target: 5'- -cGGCCCgGGGCCCGCGGGGcggcgcggagacggcGGGGGAg -3' miRNA: 3'- caCCGGG-UCUGGGCGCUCCa--------------UCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 79279 | 0.73 | 0.346549 |
Target: 5'- -cGGCCgCGGAccuggcCCCGUGGgcGGUGGAGGAg -3' miRNA: 3'- caCCGG-GUCU------GGGCGCU--CCAUCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 75297 | 0.72 | 0.377557 |
Target: 5'- --cGCCCuGGCCCGCGAGGUGGc--- -3' miRNA: 3'- cacCGGGuCUGGGCGCUCCAUCuccu -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 132965 | 0.71 | 0.410379 |
Target: 5'- -cGGCCCAGGCCgC-CGAGacGGAGGAg -3' miRNA: 3'- caCCGGGUCUGG-GcGCUCcaUCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 61718 | 0.71 | 0.418857 |
Target: 5'- -cGGCCCAGugCCGCacGGacGAGGAg -3' miRNA: 3'- caCCGGGUCugGGCGcuCCauCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 34838 | 0.71 | 0.436128 |
Target: 5'- -gGGCCCGGGCcggaCCGCcGGGcGGGGGAc -3' miRNA: 3'- caCCGGGUCUG----GGCGcUCCaUCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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