miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5415 5' -60.5 NC_001798.1 + 2356 0.66 0.694557
Target:  5'- gGUGGUCCGugagcucggccacGGCCCGCGGGGcgcAGuAGGc -3'
miRNA:   3'- -CACCGGGU-------------CUGGGCGCUCCa--UC-UCCu -5'
5415 5' -60.5 NC_001798.1 + 2551 0.69 0.528045
Target:  5'- -cGGCCCccgcgggagGGGCggCCGCGGGGcGGGGGGc -3'
miRNA:   3'- caCCGGG---------UCUG--GGCGCUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 11233 0.67 0.646114
Target:  5'- -gGGCCguCGGGCCacuGCGGGGccGAGGAc -3'
miRNA:   3'- caCCGG--GUCUGGg--CGCUCCauCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 15058 0.66 0.724653
Target:  5'- -gGGCCCGGGgCgCGCGGGG-GGuGGu -3'
miRNA:   3'- caCCGGGUCUgG-GCGCUCCaUCuCCu -5'
5415 5' -60.5 NC_001798.1 + 15324 0.66 0.734219
Target:  5'- -cGGCCgaGGGCCCcgGCGcGGUAGcGGGGg -3'
miRNA:   3'- caCCGGg-UCUGGG--CGCuCCAUC-UCCU- -5'
5415 5' -60.5 NC_001798.1 + 15439 0.69 0.518493
Target:  5'- -gGGcCCCGGAgUCGUGGGGcGGGGGGu -3'
miRNA:   3'- caCC-GGGUCUgGGCGCUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 16158 0.7 0.462784
Target:  5'- -gGGCaCCGagcgccacgggcGGCCCGCGGGGaccgGGGGGAc -3'
miRNA:   3'- caCCG-GGU------------CUGGGCGCUCCa---UCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 22131 0.67 0.656051
Target:  5'- -cGGCCCcuuugGGGCCgGCGGGGgccaacGGGAg -3'
miRNA:   3'- caCCGGG-----UCUGGgCGCUCCauc---UCCU- -5'
5415 5' -60.5 NC_001798.1 + 23873 0.67 0.665969
Target:  5'- -cGGCCUcugggGGGCgCC-CGAGGcGGAGGAg -3'
miRNA:   3'- caCCGGG-----UCUG-GGcGCUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 24027 0.69 0.537661
Target:  5'- gGUGGCuCCAGaACCCGCGcguGGcgcccGGGGAc -3'
miRNA:   3'- -CACCG-GGUC-UGGGCGCu--CCau---CUCCU- -5'
5415 5' -60.5 NC_001798.1 + 25517 0.67 0.636167
Target:  5'- -cGGCCUGGAUgCGCcAGGUgcccgacccGGAGGAc -3'
miRNA:   3'- caCCGGGUCUGgGCGcUCCA---------UCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 27110 0.68 0.606338
Target:  5'- gGUGGCCCgAGccccCCCGC-AGGagcgGGAGGGa -3'
miRNA:   3'- -CACCGGG-UCu---GGGCGcUCCa---UCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 27271 0.67 0.636167
Target:  5'- --aGCCCcguGGCgCGCGGGGgGGAGGGg -3'
miRNA:   3'- cacCGGGu--CUGgGCGCUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 28751 0.78 0.159939
Target:  5'- -gGGCCCacgaagacggcGGACCCGCgGAGGaGGAGGAg -3'
miRNA:   3'- caCCGGG-----------UCUGGGCG-CUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 32888 0.68 0.606338
Target:  5'- -cGGCCgAGGCgCCucgggggcaggGgGAGGUGGGGGGg -3'
miRNA:   3'- caCCGGgUCUG-GG-----------CgCUCCAUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 33367 0.68 0.616272
Target:  5'- cUGGCCggcCAGACCCuG-GGGGUGGuGGGc -3'
miRNA:   3'- cACCGG---GUCUGGG-CgCUCCAUCuCCU- -5'
5415 5' -60.5 NC_001798.1 + 34010 0.68 0.596422
Target:  5'- --cGCCCGcGCCCaCGcGGUAGAGGAa -3'
miRNA:   3'- cacCGGGUcUGGGcGCuCCAUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 34127 0.66 0.735171
Target:  5'- -gGGCCC-GACCCGCGccugcccccccGGGaacgacgacggggggGGGGGAa -3'
miRNA:   3'- caCCGGGuCUGGGCGC-----------UCCa--------------UCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 34742 0.66 0.68572
Target:  5'- -gGGCCCGGgagcggggcgGCCCGgGAGGgAGAaGAa -3'
miRNA:   3'- caCCGGGUC----------UGGGCgCUCCaUCUcCU- -5'
5415 5' -60.5 NC_001798.1 + 34838 0.71 0.436128
Target:  5'- -gGGCCCGGGCcggaCCGCcGGGcGGGGGAc -3'
miRNA:   3'- caCCGGGUCUG----GGCGcUCCaUCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.