miRNA display CGI


Results 41 - 60 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 3' -60.2 NC_001798.1 + 52336 0.73 0.363766
Target:  5'- aGCCccggGGUCGUGgcgGCCGAGCAcGAGGCg -3'
miRNA:   3'- -CGG----UCGGCGCa--CGGCUUGUcCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 58754 0.73 0.364541
Target:  5'- aGCCcGCCGacgacaacccccaggGUGCCGAcaaACAGG-GGCCg -3'
miRNA:   3'- -CGGuCGGCg--------------CACGGCU---UGUCCuCCGG- -5'
5422 3' -60.2 NC_001798.1 + 36553 0.73 0.370786
Target:  5'- gGCCgggcgggGGCgCGCGgcgGCCGGGCGGGGgcgcgcggcGGCCg -3'
miRNA:   3'- -CGG-------UCG-GCGCa--CGGCUUGUCCU---------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 36616 0.72 0.386716
Target:  5'- gGCCgggcgggGGCgCGCGgcgGCCGGGCGGGGGcGCg -3'
miRNA:   3'- -CGG-------UCG-GCGCa--CGGCUUGUCCUC-CGg -5'
5422 3' -60.2 NC_001798.1 + 2454 0.72 0.387524
Target:  5'- cGCCAGCCGCccUGCgGGuCGGGgcccucggcGGGCCg -3'
miRNA:   3'- -CGGUCGGCGc-ACGgCUuGUCC---------UCCGG- -5'
5422 3' -60.2 NC_001798.1 + 23816 0.72 0.390768
Target:  5'- gGCCGGCCccccgcccccggggcGCGUGCUGuACGGcGGGCUg -3'
miRNA:   3'- -CGGUCGG---------------CGCACGGCuUGUCcUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 147464 0.72 0.395667
Target:  5'- cGCCGcGCCGCGUgaGCCGuccGCcGGGGGaCCc -3'
miRNA:   3'- -CGGU-CGGCGCA--CGGCu--UGuCCUCC-GG- -5'
5422 3' -60.2 NC_001798.1 + 72829 0.72 0.401433
Target:  5'- gGCCGGCuaucaggccgcacgCGCGgcacggGCCccGAGCGGGuGGCCg -3'
miRNA:   3'- -CGGUCG--------------GCGCa-----CGG--CUUGUCCuCCGG- -5'
5422 3' -60.2 NC_001798.1 + 19967 0.72 0.401433
Target:  5'- aGCCgAGCCGCGauagccccGCCGGACGcGGAuuccggguucucccGGCCg -3'
miRNA:   3'- -CGG-UCGGCGCa-------CGGCUUGU-CCU--------------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 73239 0.72 0.40392
Target:  5'- cGCCGGCC-CGgggGCCcccggGGACcuGGAGGCCc -3'
miRNA:   3'- -CGGUCGGcGCa--CGG-----CUUGu-CCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 129340 0.72 0.40392
Target:  5'- -aCGGCCGCGgagcgcccGCCGGGCcuGGcGGGGCCc -3'
miRNA:   3'- cgGUCGGCGCa-------CGGCUUG--UC-CUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 6232 0.72 0.412281
Target:  5'- gGCCGGCCGgGgggaCGGGCGGGggacggggggacGGGCCg -3'
miRNA:   3'- -CGGUCGGCgCacg-GCUUGUCC------------UCCGG- -5'
5422 3' -60.2 NC_001798.1 + 110519 0.72 0.420748
Target:  5'- uCUGGCCGCGU-CCGcGCuGGGGGUCg -3'
miRNA:   3'- cGGUCGGCGCAcGGCuUGuCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 128952 0.72 0.420748
Target:  5'- cCCGGgCGCGUuCCGGGCccggAGGAGGCg -3'
miRNA:   3'- cGGUCgGCGCAcGGCUUG----UCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 133288 0.71 0.428457
Target:  5'- aCCauGGCCGCGUGCCugcagugggacucGAuggcCGGGGGGUCg -3'
miRNA:   3'- cGG--UCGGCGCACGG-------------CUu---GUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 78263 0.71 0.429319
Target:  5'- cGCuCGGCgGCGUGCCccuGGACcuGGcGGCCg -3'
miRNA:   3'- -CG-GUCGgCGCACGG---CUUGu-CCuCCGG- -5'
5422 3' -60.2 NC_001798.1 + 61717 0.71 0.429319
Target:  5'- -aCGGCC-CaGUGCCGcacgGACgAGGAGGCCa -3'
miRNA:   3'- cgGUCGGcG-CACGGC----UUG-UCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 97640 0.71 0.429319
Target:  5'- gGCC-GCCGCGga-CGuGCGGGAGcGCCg -3'
miRNA:   3'- -CGGuCGGCGCacgGCuUGUCCUC-CGG- -5'
5422 3' -60.2 NC_001798.1 + 44176 0.71 0.429319
Target:  5'- cCCAGCaCGCGcgccucguggUGCaCGAACAGcgugguGAGGCCg -3'
miRNA:   3'- cGGUCG-GCGC----------ACG-GCUUGUC------CUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 69144 0.71 0.435379
Target:  5'- gGCCAGUCGCucggucUGCCGGcCGGGcggagcccgauggcGGGCCa -3'
miRNA:   3'- -CGGUCGGCGc-----ACGGCUuGUCC--------------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.