miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5429 3' -61 NC_001798.1 + 46764 0.66 0.75662
Target:  5'- -aCGGCCCauuCGGAGUCcccgcauUCUgCCGGGg -3'
miRNA:   3'- uaGCUGGGgc-GCCUCAGc------AGA-GGCCC- -5'
5429 3' -61 NC_001798.1 + 22988 0.66 0.747457
Target:  5'- cGUCGACgagccugCCGCGGAcggcGUCGUCUcgCCGcGGc -3'
miRNA:   3'- -UAGCUGg------GGCGCCU----CAGCAGA--GGC-CC- -5'
5429 3' -61 NC_001798.1 + 15227 0.66 0.747457
Target:  5'- -gCGGgUCCGUGuGGGUgCGUCUuuGGGu -3'
miRNA:   3'- uaGCUgGGGCGC-CUCA-GCAGAggCCC- -5'
5429 3' -61 NC_001798.1 + 75930 0.66 0.741915
Target:  5'- cUCG--CCCGCGGGGUCGaCUcggucucgcagcgcgCCGGGc -3'
miRNA:   3'- uAGCugGGGCGCCUCAGCaGA---------------GGCCC- -5'
5429 3' -61 NC_001798.1 + 110283 0.66 0.738203
Target:  5'- cUCGGCCUCGUGGGGgccgUGUUUCUGc- -3'
miRNA:   3'- uAGCUGGGGCGCCUCa---GCAGAGGCcc -5'
5429 3' -61 NC_001798.1 + 134658 0.66 0.738203
Target:  5'- -gCGGCCCCGCGGAcaccCG-CagCGGGu -3'
miRNA:   3'- uaGCUGGGGCGCCUca--GCaGagGCCC- -5'
5429 3' -61 NC_001798.1 + 64117 0.66 0.738203
Target:  5'- -cCGGCCCCcgacGCguggguaucuagGGGGUCGgugCUCgCGGGg -3'
miRNA:   3'- uaGCUGGGG----CG------------CCUCAGCa--GAG-GCCC- -5'
5429 3' -61 NC_001798.1 + 11696 0.66 0.727927
Target:  5'- uGUCGuugUCCGUGGAgggguggGUCGggaggCUCCGGGg -3'
miRNA:   3'- -UAGCug-GGGCGCCU-------CAGCa----GAGGCCC- -5'
5429 3' -61 NC_001798.1 + 118678 0.66 0.723226
Target:  5'- -cUGGCgCUCGCGGAcguggcgcacgaaucGuUCGUCUCCGGa -3'
miRNA:   3'- uaGCUG-GGGCGCCU---------------C-AGCAGAGGCCc -5'
5429 3' -61 NC_001798.1 + 121877 0.66 0.719452
Target:  5'- -aCGGCCaCCGCGGAGgaCGUgUCCa-- -3'
miRNA:   3'- uaGCUGG-GGCGCCUCa-GCAgAGGccc -5'
5429 3' -61 NC_001798.1 + 96676 0.66 0.719452
Target:  5'- -aCGGCCgCGCuGGAG-CGcgUCCGGGa -3'
miRNA:   3'- uaGCUGGgGCG-CCUCaGCagAGGCCC- -5'
5429 3' -61 NC_001798.1 + 127005 0.66 0.70997
Target:  5'- -gCGAUCggaCGCGGuGUCG-CUCCGGc -3'
miRNA:   3'- uaGCUGGg--GCGCCuCAGCaGAGGCCc -5'
5429 3' -61 NC_001798.1 + 86866 0.66 0.70997
Target:  5'- --aGACCCgGCGGcGGUCGcgCUuuuccgccgCCGGGa -3'
miRNA:   3'- uagCUGGGgCGCC-UCAGCa-GA---------GGCCC- -5'
5429 3' -61 NC_001798.1 + 147220 0.67 0.700429
Target:  5'- --gGGCCCCcgGCGGAGcgCGggggCcCCGGGg -3'
miRNA:   3'- uagCUGGGG--CGCCUCa-GCa---GaGGCCC- -5'
5429 3' -61 NC_001798.1 + 59744 0.67 0.690835
Target:  5'- uUCGGCCCCGgGGugccuccgcuuGGUuccCGgcggUUCCGGGa -3'
miRNA:   3'- uAGCUGGGGCgCC-----------UCA---GCa---GAGGCCC- -5'
5429 3' -61 NC_001798.1 + 123109 0.67 0.690835
Target:  5'- aAUCGccGCCuCUGCGGgcuAGUgGUCuuUCCGGGa -3'
miRNA:   3'- -UAGC--UGG-GGCGCC---UCAgCAG--AGGCCC- -5'
5429 3' -61 NC_001798.1 + 147463 0.67 0.690835
Target:  5'- -aCGccGCgCCGCGuGAGcCGUCcgCCGGGg -3'
miRNA:   3'- uaGC--UGgGGCGC-CUCaGCAGa-GGCCC- -5'
5429 3' -61 NC_001798.1 + 150903 0.67 0.671523
Target:  5'- -cCGcCCCCGCgccGGGG-CGcUCUUCGGGg -3'
miRNA:   3'- uaGCuGGGGCG---CCUCaGC-AGAGGCCC- -5'
5429 3' -61 NC_001798.1 + 7641 0.67 0.671523
Target:  5'- -cCGGCCCC-CGGAGUCccccggCUCCGa- -3'
miRNA:   3'- uaGCUGGGGcGCCUCAGca----GAGGCcc -5'
5429 3' -61 NC_001798.1 + 73119 0.67 0.671523
Target:  5'- --gGACUCCGUGGAccUGUCUCCccaGGGg -3'
miRNA:   3'- uagCUGGGGCGCCUcaGCAGAGG---CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.