miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5435 3' -57 NC_001798.1 + 153203 0.66 0.90043
Target:  5'- gCCGGUUCaaCCCUAGA---C-CGCCCGAc -3'
miRNA:   3'- -GGUCAGG--GGGAUCUugaGuGCGGGCU- -5'
5435 3' -57 NC_001798.1 + 81950 0.66 0.90043
Target:  5'- uCCcG-CCCCCac--GCUCGCGCCCa- -3'
miRNA:   3'- -GGuCaGGGGGaucuUGAGUGCGGGcu -5'
5435 3' -57 NC_001798.1 + 153057 0.66 0.898537
Target:  5'- gCCGGcgccgCCCCCUGGGGCgggCggagcggcggggcgGCGCCgGGc -3'
miRNA:   3'- -GGUCa----GGGGGAUCUUGa--G--------------UGCGGgCU- -5'
5435 3' -57 NC_001798.1 + 87322 0.66 0.894041
Target:  5'- uCCAGgaCCUCCUGGccgauacGCUCGgccaGCCCGAg -3'
miRNA:   3'- -GGUCa-GGGGGAUCu------UGAGUg---CGGGCU- -5'
5435 3' -57 NC_001798.1 + 9485 0.66 0.894041
Target:  5'- uCCAGUCCgCgUAcAGCUCGCuGUCCGc -3'
miRNA:   3'- -GGUCAGGgGgAUcUUGAGUG-CGGGCu -5'
5435 3' -57 NC_001798.1 + 57131 0.66 0.890101
Target:  5'- cCCAGcggCCCgacgaccgaguacagCCgcGGGCUgGCGCCCGGg -3'
miRNA:   3'- -GGUCa--GGG---------------GGauCUUGAgUGCGGGCU- -5'
5435 3' -57 NC_001798.1 + 78987 0.66 0.880603
Target:  5'- -aAGUCCCCCgaGGggUUCcGCGCCa-- -3'
miRNA:   3'- ggUCAGGGGGa-UCuuGAG-UGCGGgcu -5'
5435 3' -57 NC_001798.1 + 108571 0.66 0.880603
Target:  5'- gCGGUCCCgggCCUGGGuaacAUUCGCGgCCGc -3'
miRNA:   3'- gGUCAGGG---GGAUCU----UGAGUGCgGGCu -5'
5435 3' -57 NC_001798.1 + 82248 0.66 0.880603
Target:  5'- aCCAGcCCCCCgc---CUUugGCCCc- -3'
miRNA:   3'- -GGUCaGGGGGaucuuGAGugCGGGcu -5'
5435 3' -57 NC_001798.1 + 154238 0.66 0.880603
Target:  5'- gCCAGUCCgugcuugCCUAgcGAACUCACccguCCCGGc -3'
miRNA:   3'- -GGUCAGGg------GGAU--CUUGAGUGc---GGGCU- -5'
5435 3' -57 NC_001798.1 + 137433 0.66 0.880603
Target:  5'- aCCGGgaccCgCCCCgcgGGGACgcgCuCGCCCGGa -3'
miRNA:   3'- -GGUCa---G-GGGGa--UCUUGa--GuGCGGGCU- -5'
5435 3' -57 NC_001798.1 + 7497 0.66 0.879211
Target:  5'- cCCGGUCCCCUacgcccccCUCGgcaGCCCGGa -3'
miRNA:   3'- -GGUCAGGGGGaucuu---GAGUg--CGGGCU- -5'
5435 3' -57 NC_001798.1 + 123433 0.66 0.873561
Target:  5'- aCCGGggcgCCCCCcccGACgcgCGCGCCCc- -3'
miRNA:   3'- -GGUCa---GGGGGaucUUGa--GUGCGGGcu -5'
5435 3' -57 NC_001798.1 + 107631 0.66 0.873561
Target:  5'- aUCAGUCgCCCgucGGGugUCgagACGCCCu- -3'
miRNA:   3'- -GGUCAGgGGGa--UCUugAG---UGCGGGcu -5'
5435 3' -57 NC_001798.1 + 100559 0.66 0.872846
Target:  5'- aCCAcgaguuuGUgCCCCUGGAGgUCuacacGCGCCaCGAg -3'
miRNA:   3'- -GGU-------CAgGGGGAUCUUgAG-----UGCGG-GCU- -5'
5435 3' -57 NC_001798.1 + 61877 0.67 0.866312
Target:  5'- cCCGGcggCCCCCUcGGGC--GCGCCCu- -3'
miRNA:   3'- -GGUCa--GGGGGAuCUUGagUGCGGGcu -5'
5435 3' -57 NC_001798.1 + 118588 0.67 0.858859
Target:  5'- gCGaUCCCCUcGGGuauCUCGCGcCCCGAu -3'
miRNA:   3'- gGUcAGGGGGaUCUu--GAGUGC-GGGCU- -5'
5435 3' -57 NC_001798.1 + 74640 0.67 0.857344
Target:  5'- aCCGGcCCCCCgaggccccccggGGGGcCUCGgGCCCa- -3'
miRNA:   3'- -GGUCaGGGGGa-----------UCUU-GAGUgCGGGcu -5'
5435 3' -57 NC_001798.1 + 19813 0.67 0.856584
Target:  5'- aCCcGUCCUcgcguUCUGGGGCUuccguugcgcgacaCGCGCCCGGg -3'
miRNA:   3'- -GGuCAGGG-----GGAUCUUGA--------------GUGCGGGCU- -5'
5435 3' -57 NC_001798.1 + 121825 0.67 0.844158
Target:  5'- cCCAGaCCCCCccaucuccccggaggAGcAGCUCACGgcCCCGGg -3'
miRNA:   3'- -GGUCaGGGGGa--------------UC-UUGAGUGC--GGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.