miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5439 3' -56.3 NC_001798.1 + 27334 0.72 0.593958
Target:  5'- -gGUgGCGGGGAaccgugugcGGGCGGGCGGGuGCu -3'
miRNA:   3'- uaCAgUGUCUCU---------UCCGCCUGCCC-UGc -5'
5439 3' -56.3 NC_001798.1 + 97523 0.71 0.614334
Target:  5'- -cGcCGCGGAgGAGGGgGGGCGGaGGCGu -3'
miRNA:   3'- uaCaGUGUCU-CUUCCgCCUGCC-CUGC- -5'
5439 3' -56.3 NC_001798.1 + 4256 0.71 0.634764
Target:  5'- -cGUCAgAcGAGGAGGCGGAUGcaGACGa -3'
miRNA:   3'- uaCAGUgU-CUCUUCCGCCUGCc-CUGC- -5'
5439 3' -56.3 NC_001798.1 + 88050 0.71 0.634764
Target:  5'- -gGcCGCuGGGggGGCGGGCucguccccuGGGGCGg -3'
miRNA:   3'- uaCaGUGuCUCuuCCGCCUG---------CCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 96031 0.71 0.644979
Target:  5'- ----gGCGGGGcGGGCGGGCGGG-CGa -3'
miRNA:   3'- uacagUGUCUCuUCCGCCUGCCCuGC- -5'
5439 3' -56.3 NC_001798.1 + 26811 0.71 0.644979
Target:  5'- -gGUCgggcggGCGGGGGucGGGCGGGCGGGGg- -3'
miRNA:   3'- uaCAG------UGUCUCU--UCCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 26841 0.71 0.644979
Target:  5'- -gGUCgggcggGCGGGGGucGGGCGGGCGGGGg- -3'
miRNA:   3'- uaCAG------UGUCUCU--UCCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 26871 0.71 0.644979
Target:  5'- -gGUCgggcggGCGGGGGucGGGCGGGCGGGGg- -3'
miRNA:   3'- uaCAG------UGUCUCU--UCCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 26960 0.71 0.644979
Target:  5'- -gGUCgggcggGCGGGGGucGGGCGGGCGGGGg- -3'
miRNA:   3'- uaCAG------UGUCUCU--UCCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 26990 0.71 0.644979
Target:  5'- -gGUCgggcggGCGGGGGucGGGCGGGCGGGGg- -3'
miRNA:   3'- uaCAG------UGUCUCU--UCCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 2557 0.71 0.665372
Target:  5'- ---cCGCGGGaGGGGCGGccGCGGGGCGg -3'
miRNA:   3'- uacaGUGUCUcUUCCGCC--UGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 16221 0.71 0.665372
Target:  5'- -cGcCGCcuguGGGggGGCGGugGGGcCGg -3'
miRNA:   3'- uaCaGUGu---CUCuuCCGCCugCCCuGC- -5'
5439 3' -56.3 NC_001798.1 + 63264 0.71 0.665372
Target:  5'- -cGUCGgGGGcGggGGCGGAauacaGGGGCu -3'
miRNA:   3'- uaCAGUgUCU-CuuCCGCCUg----CCCUGc -5'
5439 3' -56.3 NC_001798.1 + 36693 0.71 0.665372
Target:  5'- cGUGUgCGCAGGGGAGGggaGGACGcGGGgGa -3'
miRNA:   3'- -UACA-GUGUCUCUUCCg--CCUGC-CCUgC- -5'
5439 3' -56.3 NC_001798.1 + 4625 0.7 0.685657
Target:  5'- -cGUCGCgcuccGGGGggGGC-GACGGGAUc -3'
miRNA:   3'- uaCAGUG-----UCUCuuCCGcCUGCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 73512 0.7 0.692719
Target:  5'- --uUUugGGGGggGGUGGaaagguggcguaguGCGGGACGg -3'
miRNA:   3'- uacAGugUCUCuuCCGCC--------------UGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 64344 0.7 0.695738
Target:  5'- cGUGg-AC-GAGAAGGCGGACcaGGGugGa -3'
miRNA:   3'- -UACagUGuCUCUUCCGCCUG--CCCugC- -5'
5439 3' -56.3 NC_001798.1 + 115413 0.7 0.695738
Target:  5'- cUGUcCAUGGAGAAcGCGGuCGGGACc -3'
miRNA:   3'- uACA-GUGUCUCUUcCGCCuGCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 64149 0.7 0.70976
Target:  5'- gGUGcUCGCGGGGGAgacGGCGGgauccauggcgauauGCGGGACc -3'
miRNA:   3'- -UAC-AGUGUCUCUU---CCGCC---------------UGCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 8552 0.7 0.715732
Target:  5'- -gGUCGCGGc-GAGG-GGugGGGGCGa -3'
miRNA:   3'- uaCAGUGUCucUUCCgCCugCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.