miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5450 5' -64.3 NC_001798.1 + 23662 0.7 0.339868
Target:  5'- gCCG-CCGGGCCC-GCgCGGcGGUGGcCg -3'
miRNA:   3'- -GGUaGGCCCGGGuCGaGCC-CCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 5908 0.7 0.339868
Target:  5'- cCCGaggCGGGCCCGGaCggGGGGCGGg- -3'
miRNA:   3'- -GGUag-GCCCGGGUC-GagCCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 122814 0.7 0.347101
Target:  5'- gCAUCUGGGC--GGC-CaGGGCGGUCg -3'
miRNA:   3'- gGUAGGCCCGggUCGaGcCCCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 58691 0.7 0.347101
Target:  5'- gCCGUCaGGGCCgCGGCggCGcGGG-GGUCg -3'
miRNA:   3'- -GGUAGgCCCGG-GUCGa-GC-CCCgCCAG- -5'
5450 5' -64.3 NC_001798.1 + 36398 0.7 0.354443
Target:  5'- gCGgcgCCgGGGCCCcccuGCcgggCGGGGCGGUg -3'
miRNA:   3'- gGUa--GG-CCCGGGu---CGa---GCCCCGCCAg -5'
5450 5' -64.3 NC_001798.1 + 76478 0.7 0.354443
Target:  5'- gCAggCGcGGCgCAGCUCGGGGCuGGcCg -3'
miRNA:   3'- gGUagGC-CCGgGUCGAGCCCCG-CCaG- -5'
5450 5' -64.3 NC_001798.1 + 2621 0.69 0.361894
Target:  5'- gCCGcCCGGcggcGCCCuGGC-CGGGGCGGg- -3'
miRNA:   3'- -GGUaGGCC----CGGG-UCGaGCCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 116180 0.69 0.361894
Target:  5'- aCCcugCCGGGCCCGGagCuGGGCGGg- -3'
miRNA:   3'- -GGua-GGCCCGGGUCgaGcCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 140093 0.69 0.369453
Target:  5'- gUCAUCgaCGaGGCCgGGCUCcuGGGGCGG-Ca -3'
miRNA:   3'- -GGUAG--GC-CCGGgUCGAG--CCCCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 15931 0.69 0.377119
Target:  5'- aCCGUCaucuaGGGCCCcgggGGCccaaUGGGGCGG-Ca -3'
miRNA:   3'- -GGUAGg----CCCGGG----UCGa---GCCCCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 133848 0.69 0.377119
Target:  5'- aCCGaggCCuGGCCCAugauGCagGGGGCGGUg -3'
miRNA:   3'- -GGUa--GGcCCGGGU----CGagCCCCGCCAg -5'
5450 5' -64.3 NC_001798.1 + 147479 0.69 0.377119
Target:  5'- gCCGUCCgccggGGGaCCCAgGCUcCGGGGgGGg- -3'
miRNA:   3'- -GGUAGG-----CCC-GGGU-CGA-GCCCCgCCag -5'
5450 5' -64.3 NC_001798.1 + 79935 0.69 0.39595
Target:  5'- gUcgCUGGGCCCAGCUgGGcugggcguccggagcGGCGG-Cg -3'
miRNA:   3'- gGuaGGCCCGGGUCGAgCC---------------CCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 111577 0.69 0.400752
Target:  5'- aCCAcagcUCCcugagcgggGGGCCCGGC--GGGGCGGcCu -3'
miRNA:   3'- -GGU----AGG---------CCCGGGUCGagCCCCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 20362 0.69 0.400752
Target:  5'- ---gCCGGG-CgGGUUCGGGGCGG-Ca -3'
miRNA:   3'- gguaGGCCCgGgUCGAGCCCCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 128393 0.68 0.417023
Target:  5'- gCCAgcUCUGGGCCCuGCUucggCGGGGCc--- -3'
miRNA:   3'- -GGU--AGGCCCGGGuCGA----GCCCCGccag -5'
5450 5' -64.3 NC_001798.1 + 4045 0.68 0.417023
Target:  5'- gCCG-CgCGGGCCCGGCggcgcuccaggCGGcccGCGGUCg -3'
miRNA:   3'- -GGUaG-GCCCGGGUCGa----------GCCc--CGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 57445 0.68 0.417023
Target:  5'- -uGUCUucggGGGCCCGGuCUUggGGGGCGGg- -3'
miRNA:   3'- ggUAGG----CCCGGGUC-GAG--CCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 151155 0.68 0.425308
Target:  5'- gUCGUCCGuGCCgGGCcaCGGGGgGGUg -3'
miRNA:   3'- -GGUAGGCcCGGgUCGa-GCCCCgCCAg -5'
5450 5' -64.3 NC_001798.1 + 44960 0.68 0.432847
Target:  5'- -gAUUCGGGCCgCGGCuccgcccUCGGaGGCGGa- -3'
miRNA:   3'- ggUAGGCCCGG-GUCG-------AGCC-CCGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.