miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5461 5' -59.5 NC_001798.1 + 74031 0.7 0.552983
Target:  5'- aGUACccgGCGGCGCGcGGcgGCCUGCGUUGc -3'
miRNA:   3'- cCAUG---UGUCGCGC-CC--UGGGCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 26451 0.7 0.552983
Target:  5'- --gACGCGGaCGCGGG-CCCGCccccgcagauacGCUGGg -3'
miRNA:   3'- ccaUGUGUC-GCGCCCuGGGCG------------CGACU- -5'
5461 5' -59.5 NC_001798.1 + 52872 0.7 0.552983
Target:  5'- cGUGCugGGgcCGCGGG-UCCGCGCgugGAc -3'
miRNA:   3'- cCAUGugUC--GCGCCCuGGGCGCGa--CU- -5'
5461 5' -59.5 NC_001798.1 + 85256 0.69 0.582333
Target:  5'- --cGCgGCcGCGCGGGGCCgCGCGCg-- -3'
miRNA:   3'- ccaUG-UGuCGCGCCCUGG-GCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 111494 0.69 0.602077
Target:  5'- -aUGCACGGCGCGGaccuCCuCGCGCg-- -3'
miRNA:   3'- ccAUGUGUCGCGCCcu--GG-GCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 1730 0.69 0.602077
Target:  5'- cGGU--GCGGCGCaGGuCCCGCGCc-- -3'
miRNA:   3'- -CCAugUGUCGCGcCCuGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 132823 0.69 0.621905
Target:  5'- -aUGCAC-GUGCGGuucuggggccacGACgCCGCGCUGAc -3'
miRNA:   3'- ccAUGUGuCGCGCC------------CUG-GGCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 43024 0.69 0.631833
Target:  5'- cGGgg-GgAGCGCGGGGCCCcggGCGCa-- -3'
miRNA:   3'- -CCaugUgUCGCGCCCUGGG---CGCGacu -5'
5461 5' -59.5 NC_001798.1 + 51952 0.68 0.641761
Target:  5'- -cUGCuCAGCGCGGGAggggCCGCGCc-- -3'
miRNA:   3'- ccAUGuGUCGCGCCCUg---GGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 35811 0.68 0.641761
Target:  5'- cGGggGgGgGGCGuCGGGACUCGCGgaGGg -3'
miRNA:   3'- -CCa-UgUgUCGC-GCCCUGGGCGCgaCU- -5'
5461 5' -59.5 NC_001798.1 + 153823 0.68 0.641761
Target:  5'- cGGcagGCGCGGCguGCGGGGCCUccgGCGCc-- -3'
miRNA:   3'- -CCa--UGUGUCG--CGCCCUGGG---CGCGacu -5'
5461 5' -59.5 NC_001798.1 + 95305 0.68 0.658619
Target:  5'- uGUGCGCGGCgucgagucucggggGCGGGGCCCacgagcauuCGCUGu -3'
miRNA:   3'- cCAUGUGUCG--------------CGCCCUGGGc--------GCGACu -5'
5461 5' -59.5 NC_001798.1 + 123217 0.68 0.66159
Target:  5'- cGGUucugucGCGgGGCGgcuaCGGGACCCGgccuugucCGCUGAc -3'
miRNA:   3'- -CCA------UGUgUCGC----GCCCUGGGC--------GCGACU- -5'
5461 5' -59.5 NC_001798.1 + 84448 0.68 0.66159
Target:  5'- --cGCGCAGCgugGCGGGaacaaugaGCCUgauGCGCUGAa -3'
miRNA:   3'- ccaUGUGUCG---CGCCC--------UGGG---CGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 24903 0.68 0.671474
Target:  5'- uGGgcccgGCGCuGcCGCGGaGCCCGCGCcugcUGAg -3'
miRNA:   3'- -CCa----UGUGuC-GCGCCcUGGGCGCG----ACU- -5'
5461 5' -59.5 NC_001798.1 + 97542 0.68 0.671474
Target:  5'- cGGagGCGUGGCGCGGGgacGCCCGCGagcGAg -3'
miRNA:   3'- -CCa-UGUGUCGCGCCC---UGGGCGCga-CU- -5'
5461 5' -59.5 NC_001798.1 + 117566 0.68 0.680344
Target:  5'- aGGUGcCGCGGCGCGccggcauGGACCaCGgGCagGAu -3'
miRNA:   3'- -CCAU-GUGUCGCGC-------CCUGG-GCgCGa-CU- -5'
5461 5' -59.5 NC_001798.1 + 150374 0.68 0.681328
Target:  5'- cGGcGgGCGGCGCGGG-CCCGgcCGCg-- -3'
miRNA:   3'- -CCaUgUGUCGCGCCCuGGGC--GCGacu -5'
5461 5' -59.5 NC_001798.1 + 150421 0.68 0.681328
Target:  5'- gGGgcgGCgGCGGCGCGGGGCggacuccggaCGCGCgGGg -3'
miRNA:   3'- -CCa--UG-UGUCGCGCCCUGg---------GCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 62808 0.68 0.690165
Target:  5'- cGGUuucugGCGCAGCuGUGGGcccacgcgcccccGCCCGCGUUu- -3'
miRNA:   3'- -CCA-----UGUGUCG-CGCCC-------------UGGGCGCGAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.